Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1091 113 3e-20 seq778 109 4e-19 >seq1091 Length=18644 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||| || || || ||||| |||||||| || ||| | | | ||| Sbjct 1477 AATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCT 1418 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| |||||||| | || | ||| |||||||| ||||| ||||||||||| Sbjct 1417 TCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 1358 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| || |||||| | || || |||||||| || || || | ||||| ||| Sbjct 1357 TGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATAGTT 1298 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || |||||||| ||||| Sbjct 1297 TTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || ||||| |||||||| || |||| | | | ||||| | ||| Sbjct 1697 ATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCAAGTTG 1638 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||| | || | |||||||||||| ||||| ||||||||||| ||| || Sbjct 1637 CTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 1578 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || |||||||| || || || | |||||||| || ||||| Sbjct 1577 AGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTCTTTCCTGT 1518 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || ||||| Sbjct 1517 GAGAGTCTTAACAAAGATCTGCAT 1494 >seq778 Length=21138827 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || ||||||||||| || || || |||||||| || |||| | | | ||| Sbjct 14606161 AACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCATCT 14606102 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| || |||||||| | |||||||| ||||| || ||||| |||||||| || Sbjct 14606101 TCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCC 14606042 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||||| |||||| |||| || | ||| | || || || | || || ||| Sbjct 14606041 TGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAACTTCAAGAGTGATAGTT 14605982 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || | ||| || |||||||| ||||| || Sbjct 14605981 TTGCCAGTTAAAGTCTTGACAAAAATCTGCATTTT 14605947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357376132130255