Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq778 104 2e-17 seq3456 100 3e-16 seq1091 100 3e-16 >seq778 Length=21138827 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | ||||| || || || || ||||| || Sbjct 14606176 CCACCACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAG 14606117 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| |||||||| || ||||| ||||||| || || ||||| || || Sbjct 14606116 AGAGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 14606057 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||||| ||| | | ||| | || || | | ||| ||| Sbjct 14606056 ATACCTTCCTTATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAACT 14605997 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| || | ||| || |||||||||||||| Sbjct 14605996 TCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCAT 14605950 >seq3456 Length=47684 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||||| || ||||| ||||| ||||||||||| | ||| ||| || || Sbjct 38774 CACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTACGACCTTCTTC 38833 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||| || ||||| | || | ||| || ||||| || || ||||||||||| ||| Sbjct 38834 TAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTATCCTG 38893 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||| | | || | || || | ||| || |||| || | ||||| Sbjct 38894 AATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAATTGTTTT 38953 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || ||||| |||||||| ||||| Sbjct 38954 GCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq1091 Length=18644 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 1493 TCCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGA 1434 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || || || || ||||| |||| | || || || || || || Sbjct 1433 GAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGG 1374 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| || || ||| | | |||| ||| || | ||| || Sbjct 1373 AATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAAC 1314 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| ||||| ||||| || |||||||||||||| Sbjct 1313 TTCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475479146882320