Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3534 123 3e-23 seq1079 123 3e-23 seq2512 109 7e-19 seq781 93.3 5e-14 >seq3534 Length=36356 Score = 123 bits (136), Expect = 3e-23 Identities = 425/652 (65%), Gaps = 17/652 (3%) Strand=Plus/Plus Query 116644 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGA 116702 || ||||| | || ||||| || ||||| || || ||||| || ||| |||| || | Sbjct 23068 CGACCCTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCC-CAGCAGTCAGC 23126 Query 116703 GAGCCCTGGTGCCTTA-TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCT 116761 || || || || || | ||| | || || ||| | || | || | ||||| || Sbjct 23127 CAGGCCAGG-GCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCT 23185 Query 116762 TCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCAT 116821 |||||| || || || |||||||| ||| | |||||||| | | ||| || ||| Sbjct 23186 GCATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAG 23245 Query 116822 CCCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || | |||| ||||| || | || || ||| | |||||| ||||| || Sbjct 23246 CTCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGA 23304 Query 116881 TACACCGCGATTGACCCCTTGCGACGA------CCAGCCTGGTTTACATACCTCGCCGTT 116934 || | || | | || | |||| ||| |||| | |||||||| || || Sbjct 23305 TATATAGCAAAAGCACC---GGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTG 23361 Query 116935 GCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATA 116994 || | || || ||||| |||| | |||| |||| ||||| || || ||| Sbjct 23362 CTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATA 23421 Query 116995 CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054 || ||| | | | || | | | |||| ||||| || ||||||| Sbjct 23422 AAAGTACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAG 23481 Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114 || || || | |||| | ||||||| || || || |||| |||| ||| | Sbjct 23482 ATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTG 23541 Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174 | ||||| |||||||||||||| || ||||||| || | |||||||| || || | Sbjct 23542 AGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAG 23601 Query 117175 GCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233 || ||| ||||| || | || ||||| || ||| ||||| ||| ||| | || Sbjct 23602 GCATGGGTGAAC-CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATC 23660 Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCC 117285 || ||||| ||||| | || || ||||||||||||| |||||| | ||| Sbjct 23661 ATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 23712 >seq1079 Length=19334 Score = 123 bits (136), Expect = 3e-23 Identities = 425/652 (65%), Gaps = 17/652 (3%) Strand=Plus/Minus Query 116644 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGA 116702 || ||||| | || ||||| || ||||| || || ||||| || ||| |||| || | Sbjct 5809 CGACCCTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCC-CAGCAGTCAGC 5751 Query 116703 GAGCCCTGGTGCCTTA-TCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCT 116761 || || || || || | ||| | || || ||| | || | || | ||||| || Sbjct 5750 CAGGCCAGG-GCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCT 5692 Query 116762 TCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCAT 116821 |||||| || || || |||||||| ||| | |||||||| | | ||| || ||| Sbjct 5691 GCATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAG 5632 Query 116822 CCCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || | |||| ||||| || | || || ||| | |||||| ||||| || Sbjct 5631 CTCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGA 5573 Query 116881 TACACCGCGATTGACCCCTTGCGACGA------CCAGCCTGGTTTACATACCTCGCCGTT 116934 || | || | | || | |||| ||| |||| | |||||||| || || Sbjct 5572 TATATAGCAAAAGCACC---GGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTG 5516 Query 116935 GCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATA 116994 || | || || ||||| |||| | |||| |||| ||||| || || ||| Sbjct 5515 CTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATA 5456 Query 116995 CGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAG 117054 || ||| | | | || | | | |||| ||||| || ||||||| Sbjct 5455 AAAGTACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAG 5396 Query 117055 ATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCG 117114 || || || | |||| | ||||||| || || || |||| |||| ||| | Sbjct 5395 ATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTG 5336 Query 117115 ATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTC 117174 | ||||| |||||||||||||| || ||||||| || | |||||||| || || | Sbjct 5335 AGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAG 5276 Query 117175 GCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233 || ||| ||||| || | || ||||| || ||| ||||| ||| ||| | || Sbjct 5275 GCATGGGTGAACC-ACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATC 5217 Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCC 117285 || ||||| ||||| | || || ||||||||||||| |||||| | ||| Sbjct 5216 ATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 5165 >seq2512 Length=2172 Score = 109 bits (120), Expect = 7e-19 Identities = 348/534 (65%), Gaps = 13/534 (2%) Strand=Plus/Plus Query 116760 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC 116819 || |||||| || || || |||||||| ||| | |||||||| | | ||| || || Sbjct 2 CTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTC 61 Query 116820 ATCCCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 116878 | | || || || | |||| ||||| || | || || ||| | |||||| ||||| | Sbjct 62 AGCTCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTA 120 Query 116879 GGTACACCGCGATTGACCCCTTGCGACGA------CCAGCCTGGTTTACATACCTCGCCG 116932 | || | || | | || | |||| ||| |||| | |||||||| || | Sbjct 121 GATATATAGCAAAAGCACC---GGGACGCTTATTGCCACCCTGATCCACATACCTAGCGG 177 Query 116933 TTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA 116992 | || | || || ||||| |||| | |||| |||| ||||| || || | Sbjct 178 TGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGA 237 Query 116993 TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTG 117052 || || ||| | | | || | | | |||| ||||| || ||||| Sbjct 238 TAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTG 297 Query 117053 AGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTG 117112 |||| || || | |||| | ||||||| || || || |||| |||| ||| Sbjct 298 AGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTG 357 Query 117113 CGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTG 117172 || ||||| |||||||||||||| || ||||||| || | |||||||| || || | Sbjct 358 TGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGG 417 Query 117173 TCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATG 117231 || ||| ||||| || | || ||||| || ||| ||||| ||| ||| | Sbjct 418 AGGCATGGGTGAAC-CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGA 476 Query 117232 TCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCC 117285 || || ||||| ||||| | || || ||||||||||||| |||||| | ||| Sbjct 477 TCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 530 >seq781 Length=13122981 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 || || ||||| || |||||||||| ||||| ||||||||||| || || ||||| || Sbjct 8952983 GGAAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACCGCAAGGGTTTTG 8952924 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 176950 || || || ||||| || | ||||| ||||| || || | || ||||| | | Sbjct 8952923 GCTGAGTCTCCCTCGGTGAGAATGAGGGTACATTTAATTGAATTCTTTGTTCCCGCATCG 8952864 Query 176951 TTCGCATCGTCCAACTTGGGAATACC 176976 |||||||| |||| ||| || ||||| Sbjct 8952863 TTCGCATCATCCAGCTTTGGGATACC 8952838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613479262415880