Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3534 118 2e-21 seq1079 118 2e-21 >seq3534 Length=36356 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 203831 ACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAG 203890 |||| | | ||||| | ||||| | ||| | || | ||||| | | ||| || ||| Sbjct 21699 ACCTGCTTGTTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAG 21758 Query 203891 TACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950 ||||| || ||||| || |||||| |||| |||| | |||||||||| | || | Sbjct 21759 TACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCA 21818 Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGA 204010 |||||| || ||||| | ||||| || || || || || |||||||| || ||| Sbjct 21819 TAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGA 21878 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTC 204058 ||||| || | || ||||| || ||||| | |||||||||||| ||| Sbjct 21879 TCTGCAGCAAGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTC 21926 >seq1079 Length=19334 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 203831 ACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAG 203890 |||| | | ||||| | ||||| | ||| | || | ||||| | | ||| || ||| Sbjct 7178 ACCTGCTTGTTGTCAATTGTGAATTTAATTGGGTCGGCTGCAGGACGGGTTCGGAGGTAG 7119 Query 203891 TACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950 ||||| || ||||| || |||||| |||| |||| | |||||||||| | || | Sbjct 7118 TACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTGATCTTTCCA 7059 Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGA 204010 |||||| || ||||| | ||||| || || || || || |||||||| || ||| Sbjct 7058 TAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAAAGGAGCACGA 6999 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTC 204058 ||||| || | || ||||| || ||||| | |||||||||||| ||| Sbjct 6998 TCTGCAGCAAGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTC 6951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795118990620080