Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1091 123 6e-23 seq3456 109 1e-18 >seq1091 Length=18644 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || ||||| || |||||||||| ||||||||||| | ||| Sbjct 1714 CGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTA 1655 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| || || ||||| |||||||| ||||| || ||| ||| Sbjct 1654 CGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCT 1595 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| |||||| || | ||| || | | || || || | Sbjct 1594 TCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGT 1535 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || |||||||| || ||||| || || Sbjct 1534 GTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTG 1497 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||||||||||| ||||||||||| | || | |||||||| || || Sbjct 1469 GTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCTTCAAGTTG 1410 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || || ||||| ||||| || ||||| || ||| ||||| || |||||||| Sbjct 1409 CTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 1350 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || |||| ||| || | | || || || | || || || ||||| || Sbjct 1349 AGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATAGTTTTACCGGT 1290 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 |||||| ||||||||||| || Sbjct 1289 GAGAGTCTTCACAAAAATCTG 1269 >seq3456 Length=47684 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || ||||||||||||||||||| ||||| |||| | || Sbjct 38763 CGAAGACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTA 38822 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||| || || || ||||| || || || || || || || Sbjct 38823 CGACCTTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCC 38882 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| || | || || | | || || || | Sbjct 38883 TCCTTATCCTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGT 38942 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||||||||||||||| Sbjct 38943 GTAATTGTTTTGCCAGTGAGGGTTTTCACAAAAATTTG 38980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178866572729081