Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3456 102 9e-17 seq1091 96.9 4e-15 >seq3456 Length=47684 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||||||||||||||| || || || || || | Sbjct 38768 ACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTACGACC 38827 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || || | || || || || | || | || |||||| Sbjct 38828 TTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 38887 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||| | || | | ||| || |||| || || || | || || Sbjct 38888 ATCCTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAAT 38947 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || ||||| ||||| |||||||| Sbjct 38948 TGTTTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq1091 Length=18644 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | ||| ||||||||||| |||||||| || ||||| || | || || Sbjct 1703 CACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTC 1644 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || |||||||| || || || | ||||| ||||| | || | || |||||||| Sbjct 1643 AAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 1584 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | || | | || ||||| | || || || | || ||||| || Sbjct 1583 AATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTCTT 1524 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || ||||||||||| |||||| Sbjct 1523 TCCTGTGAGAGTCTTAACAAAGATCTGCATT 1493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| || | ||| |||||||||||| |||||||| || Sbjct 1492 CCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAG 1433 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || || |||||||| || || || | || || ||||| | || Sbjct 1432 AGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGA 1373 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| ||||| ||| | || | | || ||||| | || || Sbjct 1372 ATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACT 1313 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || ||||| || || || || || ||||| || |||||| Sbjct 1312 TCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCATT 1265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565212660456360