Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1091 105 7e-18 seq3456 93.3 4e-14 seq778 89.7 5e-13 >seq1091 Length=18644 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| || || ||||| || | || |||||| ||| Sbjct 1493 AATGCAGATCTTTGTTAAGACTCTCACAGGAAAGACCATTACACTTGAAGTCGAGCCCAG 1552 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | | || | || || | ||||| || || |||||| | ||||| Sbjct 1553 CGATACCATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1612 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || ||||| || || || || | || || ||| |||||||| Sbjct 1613 ACAGCGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACTCTCTCTGACTACAA 1672 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||||| | || || ||| | ||||| || Sbjct 1673 CATCCAAAAGGAATCTACTCTACATCTTGTGCTTCG 1708 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| || ||||| || || |||| || ||| ||| Sbjct 1265 AATGCAGATTTTTGTGAAGACTCTCACCGGTAAAACTATTACTCTCGAAGTTGAGCCCAG 1324 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | | || | || || | ||||| || || |||||| | ||||| Sbjct 1325 CGATACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1384 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || ||||| || || || || | || |||||| |||||||| Sbjct 1385 ACAACGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTCTCTGACTACAA 1444 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| ||||| Sbjct 1445 CATCCAAAAGGAGTCCACACTTCACTTGGTATTGCGT 1481 >seq3456 Length=47684 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| |||||||| || || |||| || ||| | | Sbjct 38983 ATGCAAATTTTTGTGAAAACCCTCACTGGCAAAACAATTACACTCGAGGTTGAGCCGAGT 38924 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | || || || | || || ||||| || ||| | || || Sbjct 38923 GATACGATTGAGAACG-TGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCA 38865 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||||| || || || ||||| || || | || || || || ||||| Sbjct 38864 ACAACGACTCATTTTTGCTGGTAAGCAGCTAGAAGAAGGTCGTACGCTTTCTGATTACAA 38805 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| |||| || ||| | ||||| ||| | | ||||| Sbjct 38804 TATCCAAAAGGAGTCGACTCTACATCTTGTGCTTCGTCTTCGTGGCGG 38757 >seq778 Length=21138827 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || | || |||||||| ||||| | || || ||| | Sbjct 14605947 AAAATGCAGATTTTTGTCAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCCT 14606006 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | || | ||||| | || || || || |||||| | || Sbjct 14606007 TCAGATTCCATTGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGTATTCCCCCAGAT 14606066 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || ||||| ||||| || || | || || ||| |||||| Sbjct 14606067 CAACAACGTTTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACTCTCTCGGACTAC 14606126 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| |||||| | || || || |||||| ||||| Sbjct 14606127 AACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGCGT 14606165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500150023381120