Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq780 194 7e-44 seq778 134 5e-26 seq777 127 8e-24 seq1091 118 4e-21 seq3456 84.2 9e-11 >seq780 Length=14665888 Score = 194 bits (214), Expect = 7e-44 Identities = 263/366 (72%), Gaps = 8/366 (2%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 || || || |||||||||||| | ||| | |||||| | || ||||| || | || Sbjct 8004910 AAGACATTCGCTCCTGAAGAAGTCTCAGCCATGGTTTTAGGCAAGATGAAGGAGATTGCT 8004969 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 || ||| ||||| |||| ||||| |||||||| ||||||| || ||||| |||||| Sbjct 8004970 GAGGCCTATCTTGGTACTCCGGTTACCCATGCAGTAGTTACTGTACCAGCTTACTTCAAT 8005029 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||||||||| |||||||| ||||| ||||| ||||| ||||||| ||| || || Sbjct 8005030 GATGCACAACGTCAAGCAACCAAAGACGCAGGTGCCATTGCAGGTTTAACTGTCCTCCGT 8005089 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA 451471 || || |||||||| || || || ||| | || || ||| | | | |||||| | Sbjct 8005090 ATCATCAATGAACCAACTGCCGCAGCTATTGCCTACGGATTGG-------ATAAGAAAGA 8005142 Query 451472 GA-AGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACT 451530 || ||||| || || | || |||||||| ||||| || || ||| || | | Sbjct 8005143 GAGCGAAAAGAACATCCTTGTTTTTGATTTGGGTGGTGGTACCTTCGATGTCTCCCTCTT 8005202 Query 451531 TTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGG 451590 |||| || | || |||||||| || |||||| | ||| ||||| ||||| || || Sbjct 8005203 GACAATCGATAACGGTGTATTTGAGGTCGTGGCAACTAGTGGGGATACCCATCTCGGTGG 8005262 Query 451591 TGAAGA 451596 |||||| Sbjct 8005263 TGAAGA 8005268 >seq778 Length=21138827 Score = 134 bits (148), Expect = 5e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 391045 TTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAAT 391104 ||| |||| | ||||| || || || | ||||| |||||||| |||||||| ||||| Sbjct 14605945 TTAAAATGCAGATTTTTGTCAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAGC 14606004 Query 391105 CATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTG 391164 | || ||| ||||||| | | || |||||||| ||||||||||| ||||| || | Sbjct 14606005 CTTCAGATTCCATTGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGTATTCCCCCAG 14606064 Query 391165 ATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATT 391224 ||||||||||||| || || | || || || || |||||||| | ||| | |||| | Sbjct 14606065 ATCAACAACGTTTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACTCTCTCGGACT 14606124 Query 391225 ATAATATTGATAAGGATGCAACACTTCACTTAGTATT 391261 | || || | ||||| | || |||||||| || || Sbjct 14606125 ACAACATCCAGAAGGAATCTACCCTTCACTTGGTGTT 14606161 Score = 93.3 bits (102), Expect = 2e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || |||||||| || ||||| || ||||| | || || | ||||||||||| Sbjct 17600415 GACGCCGTGATTACTGTGCCTGCTTACTTTAATGACGGTCAGCGTCTGGCAACTAAAGAA 17600356 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || ||| | ||| ||||| | |||| ||||| || ||||| ||||| ||||||||| Sbjct 17600355 GCTGGAGAGCATGCAGGTTTCACAGTTCACCGAATAATAAATGAGCCTACTGCAGCTGCT 17600296 Query 451439 CTAGCATATGG 451449 || || ||||| Sbjct 17600295 CTCGCTTATGG 17600285 >seq777 Length=22338478 Score = 127 bits (140), Expect = 8e-24 Identities = 111/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||||| | |||| || |||||||| || || |||||||||||| |||| || ||||| || Sbjct 18169348 AGTTAATAATGCCGTCATTACTGTCCCTGCGTATTTCAATGATTCACAGCGTCAAGCTAC 18169289 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || || || ||||| |||| |||||||| | || ||||| |||||||| Sbjct 18169288 CAAAGATGCTGGTCAAATCGCTGGACTAAACGTTCTTCGCGTCATCAATGAGCCTACAGC 18169229 Query 451432 AGCTGCTCTAGCATATGG 451449 |||||||| || ||||| Sbjct 18169228 TGCTGCTCTTGCTTATGG 18169211 Score = 86.0 bits (94), Expect = 2e-11 Identities = 346/538 (64%), Gaps = 14/538 (3%) Strand=Plus/Minus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 || ||||||||||| ||||| ||||| ||||| ||| | | |||| | ||||| || ||| Sbjct 20630158 GGTATTGATCTTGGTACCACTTTTTCTTGTGTCGGTATATTCCAACACGGAAAAGTCGAA 20630099 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039 |||||||| |||||||| || || ||||| ||| | || | || || || | Sbjct 20630098 ATTATAGCTAATGACCAGGGCAATCGCACTACCCCTAGTTATGTTGGCTTCACAGACACC 20630039 Query 451040 GAAAGACTTTTAGGGCAAGCTGCTA--AATCAATGGTAAATTCAAATGCCAAAAACACAG 451097 || | | | || | ||||| | || ||| || | || | | ||||| | Sbjct 20630038 GAGCGGTTGATCGGTGATGCTGCCAAGAACCAA--GTGGCTATGAACCCTACCAACACCG 20629981 Query 451098 TATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAGA 451157 | | ||||| || ||| | ||||| ||| | |||||| ||| || || | Sbjct 20629980 TGTTCGATGCCAAGCGTCTCATTGGTCGTCGATTCGATGATAGCGTTGTGCAGGGGGATA 20629921 Query 451158 --AAAAATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTA 451213 || ||| | |||| |||| || ||| ||| || || | || | || Sbjct 20629920 TGAAGCATTGGCCTTTC----CATGTGGTCAATGTTGGAGGCAAACCGAAGATCGAGGTT 20629865 Query 451214 AATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACT 451273 | || || || || | || | || | | ||||| || || || |||| | || || Sbjct 20629864 GAGTACAAGGGAGAGAAGAAGTCCTTCTTTGCAGAAGAGATCTCCTCCATGG-TGTTGCT 20629806 Query 451274 -AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTAC 451332 || ||||| || ||||| || || |||| | || | ||||| || ||||| Sbjct 20629805 GAAGATGAAGGAGACAGCTGAGGCTTACCTTGGCAAGACTGTGAAAGATGCTGTCATTAC 20629746 Query 451333 TGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGC 451392 ||| || || || |||||||| || || || || || || ||||| ||| ||| | Sbjct 20629745 TGTGCCAGCCTACTTCAATGACAGCCAGCGTCAGGCCACAAAGGATGCTGGAGTGATTTC 20629686 Query 451393 TGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||| || || ||||||||||| || || || || || || ||||| | || || ||| Sbjct 20629685 TGGCTTGAACGTTCTTCGAATCATCAACGAGCCCACTGCGGCTGCCATCGCGTACGGA 20629628 >seq1091 Length=18644 Score = 118 bits (130), Expect = 4e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || || || ||||||||||||||||| || ||||| | Sbjct 1265 AATGCAGATTTTTGTGAAGACTCTCACCGGTAAAACTATTACTCTCGAAGTTGAGCCCAG 1324 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| || | | || || |||||||| |||||||| ||||| || || || Sbjct 1325 CGATACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1384 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||| | || || | || || |||||||||||||| | || | | || || || Sbjct 1385 ACAACGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTCTCTGACTACAA 1444 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | ||||||||||| ||||| Sbjct 1445 CATCCAAAAGGAGTCCACACTTCACTTGGTATT 1477 Score = 86.0 bits (94), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || ||||| || || || || || || ||||| ||||| || || | Sbjct 1493 AATGCAGATCTTTGTTAAGACTCTCACAGGAAAGACCATTACACTTGAAGTCGAGCCCAG 1552 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||| | | || || |||||||| |||||||| ||||| || || || Sbjct 1553 CGATACCATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1612 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||| | || || | || || |||||||||||||| | ||| | | || || || Sbjct 1613 ACAGCGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACTCTCTCTGACTACAA 1672 Query 391229 TATTGATAAGGA 391240 || | ||||| Sbjct 1673 CATCCAAAAGGA 1684 >seq3456 Length=47684 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || ||||| ||||| ||||| || || ||||| | | Sbjct 38983 ATGCAAATTTTTGTGAAAACCCTCACTGGCAAAACAATTACACTCGAGGTTGAGCCGAGT 38924 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || || ||||| |||||||| || || || || |||||| Sbjct 38923 GATACGATTGAGAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCAA 38864 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | ||||| | || || || || ||||| || | || | | ||||| ||| Sbjct 38863 CAACGACTCATTTTTGCTGGTAAGCAGCTAGAAGAAGGTCGTACGCTTTCTGATTACAAT 38804 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 38803 ATCCAAAAGGA 38793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975626181491444