Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq780 165 6e-35 seq777 149 5e-30 seq762 113 3e-19 seq778 107 1e-17 >seq780 Length=14665888 Score = 165 bits (182), Expect = 6e-35 Identities = 384/575 (67%), Gaps = 8/575 (1%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| |||||||||| |||||||| ||| | ||| |||| | |||| | Sbjct 8005193 ACATCGAAGGTACCACCACCCAAATCAAAAACAAGGATGTTCTTTTCGCTCTCTT---TC 8005137 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 ||||| | || || |||| ||| || |||||||||||||| || || | | ||| | Sbjct 8005136 TTATCCAATCCGTAGGCAATAGCTGCGGCAGTTGGTTCATTGATGATACGGAGGACAGTT 8005077 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | ||| ||||| ||||| ||||| || ||||| | ||||| ||| || || || || Sbjct 8005076 AAACCTGCAATGGCACCTGCGTCTTTGGTTGCTTGACGTTGTGCATCATTGAAGTAAGCT 8005017 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347 || ||||||| || |||| || || |||||| ||| || || | | ||| Sbjct 8005016 GGTACAGTAACTACTGCATGGGTAACCGGAGTACCAAGATAGGCCTCAGCAATCTCCTTC 8004957 Query 518348 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGA 518407 || || | ||||| ||| | ||| | || ||| || | || |||| || | | Sbjct 8004956 ATCTTGCCTAAAACCATGGCTGAGACTTCTTCAGGAGCGAATGTCTTGACCTCGTCACCA 8004897 Query 518408 TATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTC 518467 | ||||| | | |||||| || | || |||||||| || || | ||| Sbjct 8004896 ACTTGAACTTCCATGTGTGGTTTGTTGGCCTTGTTGATAACTTTGAAAGGATATCGTTTT 8004837 Query 518468 ATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAA 518527 ||||| ||| ||| | |||| ||| | ||| || | || |||||||| ||| Sbjct 8004836 ATATCCTCTTGCACATCCTTATCATCAAAGGTGCGACCGATAAGACGCTTTGCATCGAAA 8004777 Query 518528 ATAGTATTGGTTGGATT-AATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT- 518585 | |||||| | ||||| || ||| ||| | || || || || ||||| ||| ||| Sbjct 8004776 AGAGTATTTTTAGGATTCGATGTCAG-TTGGTTCTTCGCAGCGTCACCAATTAGACGTTC 8004718 Query 518586 --CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643 | | | |||||| | || || || || || | |||||||| ||||| || || || Sbjct 8004717 ACCATTATTTGTAAAAGCGACGTACGACGGTGTGATACGATTACCCTGATCGTTTGCGAT 8004658 Query 518644 AATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 |||||||||| ||||||| | ||||| |||| Sbjct 8004657 AATTTCAACTCGTCCATTTTTGAAAACACCGACAC 8004623 Score = 109 bits (120), Expect = 4e-18 Identities = 315/485 (65%), Gaps = 6/485 (1%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| |||||| ||| || ||||| || || |||| | || || || || || ||| Sbjct 8006045 TTATCCTCGGCAGACACTTTGAGAATGCCGTTCACATCAATTTCGAAAGTAACCTCGATT 8005986 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || |||| || | |||| || || || || | || ||| | |||| | Sbjct 8005985 TGTGGGATACCGCGAGGAGCCGGAGGAATGCCGGTGAGATCGAATTTACCCAAGAAGTGG 8005926 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 |||||||| || | || ||||| || || | || || ||||| | ||| | | Sbjct 8005925 TTATCTTTGGTCATGGGACGCTCACCTTCAAAGACCTGTATGGTAACAGTGGGTTGGTCA 8005866 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || | | ||| | || ||| || || || |||||| ||||| ||| ||| Sbjct 8005865 TCAGCAGCAGTAGAGAAGACTTGAGACTTCTTTGTAGGAATGACGGTGTTCCTAGGAATG 8005806 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549 | || ||||||| |||||| | || || | ||| | || ||| || ||||||| | Sbjct 8005805 AGTTTTGTCATAACACCACCAACAGTCTCAATACCCATAGTAAGTGGGCAAACATCAAGT 8005746 Query 517550 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 517609 || || |||| | | ||||||| ||| || | | | ||||| | |||| Sbjct 8005745 AGAACGATATCACCAGTATCTTCATCA------CCACTAATGACACCAGCTTGCACAGCA 8005692 Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||| |||||||| || | | | ||| | ||| ||||||||| Sbjct 8005691 GCACCATAGGCAACAGCCTCATCAGGGTTGATACCTCTGCTTAACTCTTTGCCATTGAAA 8005632 Query 517670 AAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 517729 || | | | |||| | ||||| ||||| | || ||| || || || || ||||| Sbjct 8005631 AATTCTTTGACGAGTTCTTGAACCTTTGGAATTCTAGTTGAACCACCGACCAAGACAATA 8005572 Query 517730 TCATG 517734 ||||| Sbjct 8005571 TCATG 8005567 >seq777 Length=22338478 Score = 149 bits (164), Expect = 5e-30 Identities = 937/1485 (63%), Gaps = 30/1485 (2%) Strand=Plus/Plus Query 517243 TGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 517302 ||| || || || | || | |||||| | ||||| |||||||| | || || || || Sbjct 20603328 TGTCGACTTGTCCACCGCCGACACATTCAAGATACCGTTGGCATCTATGTCGAAGGTCAC 20603387 Query 517303 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 517362 |||||| ||||| || || | |||| |||||||| || ||| | || | |||| Sbjct 20603388 TTCAATCTGAGGCACTCCACGAGGAGCCGGTGGGATACCAGACAACTCGAACTTGCCCAA 20603447 Query 517363 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 517422 || || || ||| | |||||||| ||| | | || || || ||| Sbjct 20603448 CAGGTTGTTGTCACGAGTCATCGCACGTTCACCTTCGTACACCTGAATCAACACACCAGG 20603507 Query 517423 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 517482 || || ||||| || || || || | | | || || || ||||| || | Sbjct 20603508 CTGGTTGTCTGAGTACGTGGTGAAGGTTTGTGTCTGCTTGGTTGGGATGGTTGTATTGCG 20603567 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 | || | | ||||| | |||||| || || || | ||||||||| | || | || Sbjct 20603568 TTTGATGAGAGCCGTCATCACACCACCAGCAGTCTCCAGACCAAGAGACAATGGTGCTAC 20603627 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTT 517601 ||| | || | | || || | | || | | ||| |||| ||| || || | Sbjct 20603628 ATCCAGGAGAAGCAGATCCTGTACTGCCTCCGACTTGTCACCTGACAA-AATGGCCGCCT 20603686 Query 517602 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 517661 | | ||| ||||| || || ||||| || || ||||| | | | || | | || Sbjct 20603687 GCACAGCTGCACCGTAGGCCACAGCCTCGTCCGGATTGATGGACTTGTTCAACTCACGAC 20603746 Query 517662 CATTGAAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACT 517720 | ||||| || | || || || || | ||||| |||||||||| ||||| ||||| Sbjct 20603747 CGTTGAAGAAGTCCTGCAACAACTTCTGC-ACCTTCGGAATACGAGTCGATCCACCAACC 20603805 Query 517721 AATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 517779 || || | || |||||| | | | || |||| || | ||| | | || || || Sbjct 20603806 AACACCACATCGTGCACC-GAGCTCTTGTCCAACTTCGCATCACGAAGCGCCTTCTCCAC 20603864 Query 517780 GGGTTCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA 517838 || || | | ||| | || | || | ||| | || |||||| ||| | ||| | Sbjct 20603865 TGGCTCCA-ATGTGCTACGGAAGAGATCAGCACACAACTCCTCGAATCGAGCACGAGTTA 20603923 Query 517839 --GA-GTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGA 517894 || ||| || || |||| || || | ||| || || || || || | | ||| Sbjct 20603924 TGGATGTG----TAGAAGTCAACACCGTCCATCAACGAGTCGACCTCTATATTTGCTTGG 20603979 Query 517895 GTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCT 517954 | ||| |||| | || || | |||||||| || || | || || | |||| Sbjct 20603980 GCACTGGAACTCAGTGTTCTCTTTGCTCTCTCACATGCGGTTCTCAATCGACGAATGGCT 20604039 Query 517955 TT--TGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG 518012 | || || ||| |||| || | |||||||| | |||||| || || ||| | Sbjct 20604040 CTCTTGTTGGTTG--TCAAGTCCTTCTTATATTTGCGCTTGAACTCCTCCACAAAGTGGT 20604097 Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 | || | ||| || || || ||||| ||||| | || | || | || | | | Sbjct 20604098 TCACCATTCGAGAGTCGAAGTCCTCACCACCCAAGTGTGTGTCGCCAGCAGTTGACTTCA 20604157 Query 518073 CTTGGAAAAGTCCATCTTCAA--GAGACAAAAGAGTTACATCATGGGTTCCACCACCCAT 518130 | | ||| | || || |||| |||| || ||| ||||| || |||||||||| Sbjct 20604158 CCTCGAAGACGCCGTCCTCAATGGAGAGAACGGAG--ACATCGAAAGTGCCACCACCCAA 20604215 Query 518131 ATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 518190 ||| || || | || || ||| | | || || || | || ||||| | || Sbjct 20604216 ATCGAAGATCAACACGTTGCGTTCAGAGCCCACCTTCTTGTCCAATCCGTACGCGATGGC 20604275 Query 518191 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 518250 ||| ||||| || |||||||| |||| | |||||| | ||| | || || ||||| Sbjct 20604276 AGCCGCAGTGGGCTCATTAATTATTCGGAGAACATTCATACCCGATATAGCACCAGCATC 20604335 Query 518251 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGT 518310 || ||||| || | || || || || || || || |||||||| || |||| Sbjct 20604336 CTTTGTGGCCTGACGCTGGCTGTCATTGAAGTAGGCTGGTACAGTAATGACAGCATTTTC 20604395 Query 518311 TACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGA 518370 || || |||| ||||| || || | ||||| || || | ||| || || Sbjct 20604396 CACAGTCTTGCCAAGGTAAGCCTCAGCTGTCTCCTTCATCTTCAGCAACACCATGGAGGA 20604455 Query 518371 AATTTGTTCTGGGGAATATTGCTTGGATTCATT---TTGATATGATACTTCAAAATATGG 518427 || | ||| || | | ||| ||| | ||| || || || | | || Sbjct 20604456 GATCTCTTCAGGAAAGAAGGACTTC--TTCTCTCCCTTG-TACACAACCTCTATCTTCGG 20604512 Query 518428 TTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTG 518487 ||| |||| || || | || ||||| | |||||||| | ||| ||| | Sbjct 20604513 TTTGCCTCCAAAATCGGCCACATGGAAAGGCCAATGCTTCATATCAGCTTGTACAGTCGC 20604572 Query 518488 GTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAT 518547 || | | | | |||||| | ||||| ||||| || | || || ||||| || || Sbjct 20604573 TTCCGCATACTTGCGACCAATAAGACGTTTGGCATCGAACACGGTGTTCGTTGGGTTCAT 20604632 Query 518548 TGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATA 518607 || |||| | ||||| ||||| ||||||| | | || || ||||| || | ||||| Sbjct 20604633 GGCTACTTGGTTCTTGGCAGCATCGCCAATCAAACGCTCGGTGTCTGTGAAGGCGACATA 20604692 Query 518608 TGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCA 518667 ||||||||||||||| ||||||||||| ||||| |||||||| || |||| ||| | Sbjct 20604693 ACTTGGAGTTGTGCGATTGCCTTGATCATTAGCAATTATTTCAACCTTGCCATGTTGAAA 20604752 Query 518668 TACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 ||||| || || || || ||||| || || ||||||| ||| Sbjct 20604753 CACACCAACGCATGAGAAGGTCGTTCCCAAGTCGATACCAACAGC 20604797 Score = 118 bits (130), Expect = 8e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 |||||| | || || ||||| || | || ||||| || || || || |||| | || Sbjct 20649893 ACCAATGAGACGCTTGGCATCGAACACGGTGTTGGTAGGGTTCATAGCCACTTGGTTCTT 20649952 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||| || |||| | || || ||||| || |||||| || || ||||| Sbjct 20649953 GGCAGCATCACCGATCAACCGCTCGGTGTCTGTGAAGCCAACATAACTAGGGGTAGTGCG 20650012 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 ||| || || ||||| || |||||||| ||||| || | ||| ||||||| |||||| Sbjct 20650013 ATTGCCCTGGTCATTAGCTATAATTTCGACTTTCCCGTGTTGAAATACACCAACACAAGA 20650072 Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGC 518712 ||||| || || | ||||||||||| ||| Sbjct 20650073 GAAAGTAGTACCAAGATCAATACCAACAGC 20650102 >seq762 Length=501 Score = 113 bits (124), Expect = 3e-19 Identities = 264/391 (68%), Gaps = 8/391 (2%) Strand=Plus/Plus Query 517660 ACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAAC 517719 |||||| || |||| | || | || | ||||| |||||||||| ||| |||||||| Sbjct 51 ACCATTAAAGAAATCTTGGAGTAATTTTTGCACCTTCGGAATACGAGTTGAACCTCCAAC 110 Query 517720 TAATACAATTTCATGCACCTGTG-ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAA 517778 ||||||||||||||| | ||| | ||| |||| || | ||| || | | || |||| Sbjct 111 TAATACAATTTCATG-AACTGAGCTTTTGTCCATCTTAGCATCACGTAGAGCCTTCTCAA 169 Query 517779 CGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA 517838 | ||||||||| ||| || | || ||||||||| |||||| ||| | ||||| Sbjct 170 CTGGTTCAAGAGTGCTTCTGAATAGATCACCACAAAGTTCCTCGAATCGAGCCCGAGTAA 229 Query 517839 GAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCG 517898 ||| | |||||||||| | ||||| ||||||| ||||| | | |||| Sbjct 230 TGGTGGTGTAGAAATCAATTCCATTCAACAACGAATCAATCTCAATATTTGCCTGAGAGC 289 Query 517899 AAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTG 517958 ||| || | | || || | || || || || |||| || || | ||| | Sbjct 290 TTGAACTGAGGGTTCTCTTTGCTCTCTCGCACGCAGTTCTTAATCGACGAATAGCTCGT- 348 Query 517959 CTGATTGA-TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--A 518015 || |||| | || ||| |||| || | |||||| || | |||| | ||| | | Sbjct 349 TTGTTTGACCTTAAGTCTTCCTTATGCTTGCGCTTGAATTCGTTAACAAA--ATGATCAA 406 Query 518016 CAAGACGATTATCAAAATCTTCACCTCCCAA 518046 | | ||||||||| || || ||||| ||||| Sbjct 407 CCATACGATTATCGAAGTCCTCACCACCCAA 437 >seq778 Length=21138827 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 668850 TAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTG 668909 ||| ||| |||| |||||||||||||| || |||||||| |||||||| || | |||| Sbjct 8376648 TAAAAGGCAAAGCTGGTCGTATTAGAGGCAACTTGATGGGCAAACGTGTTGACTTTTCTG 8376707 Query 668910 CACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTA 668969 | || ||||| |||||| ||||||| ||| | || || || ||||||| ||||| | | Sbjct 8376708 CTCGAACAGTCATTACTGCTGATCCTAATCTGGCCCTTGATCAAGTTGGAGTTCCCCGTT 8376767 Query 668970 TTATTGCTAAAAATCTTACTTT 668991 || ||| | ||||| || || Sbjct 8376768 CAATCGCTCAGAATCTCACGTT 8376789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780641622339958