Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3534 138 1e-27 seq1079 138 1e-27 seq781 93.3 5e-14 seq779 91.5 2e-13 >seq3534 Length=36356 Score = 138 bits (152), Expect = 1e-27 Identities = 424/645 (66%), Gaps = 17/645 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||||| ||||| || | | |||||||| || || ||| | || ||| Sbjct 23705 CCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAAGCTGCC 23646 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 || ||||| ||| | ||||| | | || ||||| ||| || | || || ||||| Sbjct 23645 TTTGAGACGTACCATCTAATGTCTCAGAAGTG-GTTCACCCATGCCTCCCCGACTCTCTT 23587 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| | || ||||||| || |||||||| || |||||||| | ||| ||||| || Sbjct 23586 CAATTCGGGCACACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGATGA 23527 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || |||| || |||| ||||||| ||||||||| ||||| Sbjct 23526 CAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGCTGG 23467 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 || | || | | | ||| | | | ||| || ||| || || || Sbjct 23466 GGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCAAGGGTACTTTTATCGCCGGAACCAA 23407 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 |||| |||| |||| | |||| ||||| || || | || ||| || | ||||| Sbjct 23406 TGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCGCTAGGTATGT 23347 Query 111971 AAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 | || | ||| ||||| | || || | || | ||||| || || ||||| Sbjct 23346 GGATCAGGGTGGCAATAAGCGTCCC---GGTGCTTTTGCTATATATCTAGAACCCTGGCA 23290 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 | | ||| || || ||||| | ||| |||| ||| || | ||||||| || || Sbjct 23289 CCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTCG-TG 23231 Query 112085 CC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | | |||||||| | |||||||||||||| ||||| |||||| |||| ||| | || Sbjct 23230 CTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACGATG 23171 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGTGGG 112201 || || ||| || || | ||| || || || || || || | || ||| | ||| Sbjct 23170 ATGAGAAGTGGACTTTCATGGATCCTCACGAATGC-CCTGGCCTGGCTGACTGCTG-GGG 23113 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246 |||||||| ||||| ||||| || ||||| || |||| |||| Sbjct 23112 AGAGGAGTTCGAAGCGCTCTATACCAAGTATGAAAAAGAGGGTCG 23068 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 113103 GGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTT 113162 ||||| |||||| | || | | ||||||||||| || ||| |||| | || || Sbjct 21979 GGTTCTATTCAACACATCGACGGCATTCCAGATGATATCAAGGCTCTGTATAGGACTGTG 21920 Query 113163 TGGGAAAT--CA-AGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATT 113219 ||||| || || ||| || || | ||||| | || |||||||||| || ||||| Sbjct 21919 TGGGAGATTCCACAGA-AAACGA--TTATTGATCTTGCTGCAGATCGTGCTCCTTTCATA 21863 Query 113220 GATCAAAGTCAAAGTATGAATCTATTCATGGA-AAGTCCAACGATGTCCAAGCTCTCTTC 113278 ||||| |||||| ||||||| ||| | || ||||| ||| ||| || |||| Sbjct 21862 GATCAGAGTCAATCACTGAATCTCCACATAAAGGAGCCCAACTATG-GAAAGATCACTTC 21804 Query 113279 TATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGA 113333 ||||| | ||| |||| |||||| || || || || ||||| ||||||||| Sbjct 21803 CATGCATTTCTACGCGTGGAGGAAGGGACTGAAGACTGGAATGTACTACCTCCGA 21749 >seq1079 Length=19334 Score = 138 bits (152), Expect = 1e-27 Identities = 424/645 (66%), Gaps = 17/645 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||||| ||||| || | | |||||||| || || ||| | || ||| Sbjct 5172 CCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAAGCTGCC 5231 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 || ||||| ||| | ||||| | | || ||||| ||| || | || || ||||| Sbjct 5232 TTTGAGACGTACCATCTAATGTCTCAGAAGTG-GTTCACCCATGCCTCCCCGACTCTCTT 5290 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| | || ||||||| || |||||||| || |||||||| | ||| ||||| || Sbjct 5291 CAATTCGGGCACACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGATGA 5350 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || |||| || |||| ||||||| ||||||||| ||||| Sbjct 5351 CAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGCTGG 5410 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 || | || | | | ||| | | | ||| || ||| || || || Sbjct 5411 GGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCAAGGGTACTTTTATCGCCGGAACCAA 5470 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 |||| |||| |||| | |||| ||||| || || | || ||| || | ||||| Sbjct 5471 TGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCGCTAGGTATGT 5530 Query 111971 AAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 | || | ||| ||||| | || || | || | ||||| || || ||||| Sbjct 5531 GGATCAGGGTGGCAATAAGCGTCCC---GGTGCTTTTGCTATATATCTAGAACCCTGGCA 5587 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 | | ||| || || ||||| | ||| |||| ||| || | ||||||| || || Sbjct 5588 CCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTCG-TG 5646 Query 112085 CC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | | |||||||| | |||||||||||||| ||||| |||||| |||| ||| | || Sbjct 5647 CTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACGATG 5706 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGTGGG 112201 || || ||| || || | ||| || || || || || || | || ||| | ||| Sbjct 5707 ATGAGAAGTGGACTTTCATGGATCCTCACGAATGC-CCTGGCCTGGCTGACTGCTG-GGG 5764 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246 |||||||| ||||| ||||| || ||||| || |||| |||| Sbjct 5765 AGAGGAGTTCGAAGCGCTCTATACCAAGTATGAAAAAGAGGGTCG 5809 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 113103 GGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTT 113162 ||||| |||||| | || | | ||||||||||| || ||| |||| | || || Sbjct 6898 GGTTCTATTCAACACATCGACGGCATTCCAGATGATATCAAGGCTCTGTATAGGACTGTG 6957 Query 113163 TGGGAAAT--CA-AGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATT 113219 ||||| || || ||| || || | ||||| | || |||||||||| || ||||| Sbjct 6958 TGGGAGATTCCACAGA-AAACGA--TTATTGATCTTGCTGCAGATCGTGCTCCTTTCATA 7014 Query 113220 GATCAAAGTCAAAGTATGAATCTATTCATGGA-AAGTCCAACGATGTCCAAGCTCTCTTC 113278 ||||| |||||| ||||||| ||| | || ||||| ||| ||| || |||| Sbjct 7015 GATCAGAGTCAATCACTGAATCTCCACATAAAGGAGCCCAACTATG-GAAAGATCACTTC 7073 Query 113279 TATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGA 113333 ||||| | ||| |||| |||||| || || || || ||||| ||||||||| Sbjct 7074 CATGCATTTCTACGCGTGGAGGAAGGGACTGAAGACTGGAATGTACTACCTCCGA 7128 >seq781 Length=13122981 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 176924 GGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTC 176983 || |||||||| || |||| ||||| ||||| |||||||| || ||||| || ||||| Sbjct 8952983 GGAAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACCGCAAGGGTTTTG 8952924 Query 176984 GCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTG 177043 || || || ||||| || | ||||| ||||| || || | || ||||| | | Sbjct 8952923 GCTGAGTCTCCCTCGGTGAGAATGAGGGTACATTTAATTGAATTCTTTGTTCCCGCATCG 8952864 Query 177044 TTCGCATCATCCAATTTGGGAATACC 177069 ||||||||||||| || || ||||| Sbjct 8952863 TTCGCATCATCCAGCTTTGGGATACC 8952838 >seq779 Length=16055361 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGCGTTCCTTTGCTGAGCG 102184 ||||| ||||||||||| ||| |||| | | |||||| |||| || | ||| ||||| Sbjct 8446552 AAGAAGGCGGATTGGGCCCTGAGGTGGATCGGGAACAAAGACGCG-TCGTATGCGGAGCG 8446610 Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 102244 | | || ||||| ||| |||||| | |||||||| ||||| ||| | | || | Sbjct 8446611 TGTTGTGGCGTTTGCAGCTGTAGAGGGTGTATTCTTCTCGGGTTCATTCGCCTCAATCTT 8446670 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 102278 ||||| |||||||| ||| | ||||| |||||| Sbjct 8446671 CTGGCTGAAGAAGCGTGGTTTAATGCCTGGTCTC 8446704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620714132942960