Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq781 91.5 2e-13 seq3534 86.0 7e-12 seq1079 86.0 7e-12 >seq781 Length=13122981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 11663 CCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGG 11722 ||||||| || ||||| |||||| || ||||||||||| | ||||| || |||| Sbjct 5847990 CCGAACGTTTTCCACCGATAGCGTCGATTTCATCGATGAAGAGAATACAGGGCGCCTTGG 5848049 Query 11723 CACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAA 11782 || || || | ||| | || || ||||| || | |||||||| || ||||| |||| Sbjct 5848050 AGCGAGCTTGATTGAACATGTCGCGAACACGTTTTGGACCAACACCGACAAACATTTCAA 5848109 Query 11783 CGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGA 11841 ||| | || | | | | || || | ||| || || || | ||||| || | ||| | Sbjct 5848110 GGAATTCTGAGCCTG-AGACGGAGAGGAAAGGTACGTTGGCTTCACCGGCTGTAGCTTTA 5848168 Query 11842 GCGAGGAGAGTCTTACCCGTACCAGGTGCACC 11873 || || |||||||| || ||||| || | ||| Sbjct 5848169 GCTAGAAGAGTCTTTCCTGTACCTGGCGGACC 5848200 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 168442 GGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTC 168501 ||||| || ||||| |||| | ||| || || ||||||||||| || || || ||||| Sbjct 8952983 GGAAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACCGCAAGGGTTTTG 8952924 Query 168502 GCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCCGTACCAGCTTTG 168561 ||||| || ||||| || | ||||| ||||| || || | || || || | | Sbjct 8952923 GCTGAGTCTCCCTCGGTGAGAATGAGGGTACATTTAATTGAATTCTTTGTTCCCGCATCG 8952864 Query 168562 TTCGCATCGTCCAATTTGGGGATACC 168587 |||||||| |||| || |||||||| Sbjct 8952863 TTCGCATCATCCAGCTTTGGGATACC 8952838 >seq3534 Length=36356 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || || || || | |||| ||||| | |||||| |||| | Sbjct 21750 CGGAGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTG 21809 Query 109468 AG-TTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 | ||| | ||| | || || || | |||| || ||| |||||| ||||| Sbjct 21810 ATCTTTCCATAGT-TGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAA 21868 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 || ||||||| || || | || || || || || ||| ||||| |||||| | Sbjct 21869 AGGAGCACGATCTGCAGCAAGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCT 21928 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCC 109637 |||| | |||||||||||| |||||| | |||||| ||||||||| || Sbjct 21929 ATACAGAGCCTTGATATCATCTGGAATGCCGTCGATGTGTTGAATAGAACC 21979 >seq1079 Length=19334 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || || || || | |||| ||||| | |||||| |||| | Sbjct 7127 CGGAGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGTG 7068 Query 109468 AG-TTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 | ||| | ||| | || || || | |||| || ||| |||||| ||||| Sbjct 7067 ATCTTTCCATAGT-TGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGAA 7009 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTT 109586 || ||||||| || || | || || || || || ||| ||||| |||||| | Sbjct 7008 AGGAGCACGATCTGCAGCAAGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTCCT 6949 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCC 109637 |||| | |||||||||||| |||||| | |||||| ||||||||| || Sbjct 6948 ATACAGAGCCTTGATATCATCTGGAATGCCGTCGATGTGTTGAATAGAACC 6898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588949179505400