Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3534 147 3e-30 seq1079 147 3e-30 seq2512 129 7e-25 seq781 114 2e-20 seq779 93.3 5e-14 >seq3534 Length=36356 Score = 147 bits (162), Expect = 3e-30 Identities = 421/639 (66%), Gaps = 15/639 (2%) Strand=Plus/Plus Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGC 106746 || ||||| || ||||| ||||| |||||||| ||| | || ||| | || || || || Sbjct 23080 TCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCC-CAGCAGTCAGCCAGGCCAGG-GC 23137 Query 106747 CTT-GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 || || ||| | | || ||| | || | || | ||||| || ||||||||| | Sbjct 23138 ATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGAT 23197 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 | |||||||| || | |||||||||||||| ||| ||| || | || ||| Sbjct 23198 CAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTC 23257 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || | ||| | ||||| || || ||| | |||||| || || ||||| | || | || Sbjct 23258 TGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAG 23317 Query 106926 ATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 || ||||| ||| | |||| ||||| | || ||| || | || | Sbjct 23318 CACCGG---GACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACACTC 23374 Query 106980 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 107039 | ||||| |||| | |||| |||| |||||| || || ||| || ||| Sbjct 23375 GGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTTGC 23434 Query 107040 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACT 107099 | | | ||| | | | |||| |||||||| ||||||||| ||||| | Sbjct 23435 TACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCACATT 23494 Query 107100 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 107159 | || || | |||||||| | || ||| ||||| | | || ||||| || | Sbjct 23495 GTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAACAGC 23554 Query 107160 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219 | ||||| || || ||||||| || | ||||||||| || || | || || ||||| Sbjct 23555 TCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACC 23614 Query 107220 TACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 || | || ||||| | ||| ||||| ||| ||| || | || || |||||||| Sbjct 23615 -ACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCGTGGATA 23673 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCC 107317 || | || ||||||||||||||||| |||||| | ||| Sbjct 23674 CCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 23712 Score = 113 bits (124), Expect = 5e-20 Identities = 171/236 (72%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 105589 TCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGA 105648 |||||| |||||||| || ||||| ||||| | |||||||||| | |||||| |||| Sbjct 21749 TCGGAGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGT 21808 Query 105649 GAGCTTGGACATCGTTGGACTT-TCCATGAAAAGATTCATACTTTGACTCTGGTCAATGA 105707 || ||| ||| ||||| || | ||| ||||||| ||||||||| || |||| Sbjct 21809 GATCTTTC-CATAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGA 21867 Query 105708 AGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCT-TG--ATTTCCCACACTG 105764 | || |||| | ||| || | |||||| | || || ||| || || |||||||| | Sbjct 21868 AAGGAGCACGATCTGCAGCAAGATCAATAA--TCGTTT-TCTGTGGAATCTCCCACACAG 21924 Query 105765 TGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCC 105820 | | || ||| ||||||||||||||| || | ||| | |||||| |||||| Sbjct 21925 TCCTATACAGAGCCTTGATATCATCTGGAATGCCGTCGATGTGTTGAATAGAACCC 21980 >seq1079 Length=19334 Score = 147 bits (162), Expect = 3e-30 Identities = 421/639 (66%), Gaps = 15/639 (2%) Strand=Plus/Minus Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGC 106746 || ||||| || ||||| ||||| |||||||| ||| | || ||| | || || || || Sbjct 5797 TCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCC-CAGCAGTCAGCCAGGCCAGG-GC 5740 Query 106747 CTT-GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 || || ||| | | || ||| | || | || | ||||| || ||||||||| | Sbjct 5739 ATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGAT 5680 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 | |||||||| || | |||||||||||||| ||| ||| || | || ||| Sbjct 5679 CAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTTC 5620 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 || | ||| | ||||| || || ||| | |||||| || || ||||| | || | || Sbjct 5619 TGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAAG 5560 Query 106926 ATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 || ||||| ||| | |||| ||||| | || ||| || | || | Sbjct 5559 CACCGG---GACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACACTC 5503 Query 106980 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 107039 | ||||| |||| | |||| |||| |||||| || || ||| || ||| Sbjct 5502 GGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACCCTTGC 5443 Query 107040 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACT 107099 | | | ||| | | | |||| |||||||| ||||||||| ||||| | Sbjct 5442 TACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCACATT 5383 Query 107100 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 107159 | || || | |||||||| | || ||| ||||| | | || ||||| || | Sbjct 5382 GTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAACAGC 5323 Query 107160 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219 | ||||| || || ||||||| || | ||||||||| || || | || || ||||| Sbjct 5322 TCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGAACC 5263 Query 107220 TACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 || | || ||||| | ||| ||||| ||| ||| || | || || |||||||| Sbjct 5262 -ACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCGTGGATA 5204 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCC 107317 || | || ||||||||||||||||| |||||| | ||| Sbjct 5203 CCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 5165 Score = 113 bits (124), Expect = 5e-20 Identities = 171/236 (72%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 105589 TCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGA 105648 |||||| |||||||| || ||||| ||||| | |||||||||| | |||||| |||| Sbjct 7128 TCGGAGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGT 7069 Query 105649 GAGCTTGGACATCGTTGGACTT-TCCATGAAAAGATTCATACTTTGACTCTGGTCAATGA 105707 || ||| ||| ||||| || | ||| ||||||| ||||||||| || |||| Sbjct 7068 GATCTTTC-CATAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGA 7010 Query 105708 AGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCT-TG--ATTTCCCACACTG 105764 | || |||| | ||| || | |||||| | || || ||| || || |||||||| | Sbjct 7009 AAGGAGCACGATCTGCAGCAAGATCAATAA--TCGTTT-TCTGTGGAATCTCCCACACAG 6953 Query 105765 TGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCC 105820 | | || ||| ||||||||||||||| || | ||| | |||||| |||||| Sbjct 6952 TCCTATACAGAGCCTTGATATCATCTGGAATGCCGTCGATGTGTTGAATAGAACCC 6897 >seq2512 Length=2172 Score = 129 bits (142), Expect = 7e-25 Identities = 350/533 (66%), Gaps = 11/533 (2%) Strand=Plus/Plus Query 106792 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 106851 || ||||||||| || |||||||| || | |||||||||||||| ||| ||| || Sbjct 2 CTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTC 61 Query 106852 GTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 106911 | || ||| || | ||| | ||||| || || ||| | |||||| || || || Sbjct 62 AGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAG 121 Query 106912 ATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGT 106965 ||| | || | || || ||||| ||| | |||| ||||| | || || Sbjct 122 ATATATAGCAAAAGCACCGG---GACGCTTATTGCCACCCTGATCCACATACCTAGCGGT 178 Query 106966 GGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT 107025 | || | || || ||||| |||| | |||| |||| |||||| || || || Sbjct 179 GCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGAT 238 Query 107026 ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA 107085 | || ||| | | | ||| | | | |||| |||||||| |||||| Sbjct 239 AAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGA 298 Query 107086 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 107145 ||| ||||| | | || || | |||||||| | || ||| ||||| | | Sbjct 299 GATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGT 358 Query 107146 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 107205 || ||||| || || ||||| || || ||||||| || | ||||||||| || || | Sbjct 359 GAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGA 418 Query 107206 TGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGT 107264 || || ||||| || | || ||||| | ||| ||||| ||| ||| || | | Sbjct 419 GGCATGGGTGAACC-ACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGAT 477 Query 107265 CTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCC 107317 | || |||||||| || | || ||||||||||||||||| |||||| | ||| Sbjct 478 CATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 530 >seq781 Length=13122981 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 169374 GGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTC 169433 |||||||| ||||| ||||||| || || || |||||||| || |||||||||||||| Sbjct 8952983 GGAAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACCGCAAGGGTTTTG 8952924 Query 169434 GCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCCGTACCCGCCTTG 169493 ||||| || ||||| |||| |||||||||||| || || | | || ||||| | | Sbjct 8952923 GCTGAGTCTCCCTCGGTGAGAATGAGGGTACATTTAATTGAATTCTTTGTTCCCGCATCG 8952864 Query 169494 TTTGCGTCGTCCAACTTGGGAATACC 169519 || || || |||| ||| || ||||| Sbjct 8952863 TTCGCATCATCCAGCTTTGGGATACC 8952838 >seq779 Length=16055361 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || ||||||||||| ||| ||| | ||||| ||| || || ||||| | ||| Sbjct 8446745 TGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAAGTGAGACCAGGCATTAAACCA 8446686 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 |||||||||| ||| | || | | |||||| || |||||||| | |||||| ||| Sbjct 8446685 CGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAGAAGAATACACCCTCTACAGCT 8446626 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTG-TGTCAAACCATTTCATTGC 117464 |||||||| | || ||||| || | || || | ||||| | | | ||| ||| || Sbjct 8446625 GCAAACGCCACAACACGCTCCGCATACGA-CGCGTCTTTGTTCCCGATCCACCTCAGGGC 8446567 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497 ||| | ||||||||||| | ||| || | ||| Sbjct 8446566 CCAATCCGCCTTCTTCTTCACACACGGCAAAGT 8446534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589953933749320