Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1091 122 6e-23 >seq1091 Length=18644 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| |||| || || || ||||| ||||| || ||| | || |||| Sbjct 1478 CAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATC 1419 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || || || ||||| || || ||||| |||||| | || | || |||||||| Sbjct 1418 TTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTC 1359 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| || || || || || | || | || |||||| |||| || || Sbjct 1358 TTGAATCTTAGCCTTTAC--ATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATA 1301 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||||||||||||||| |||||||| Sbjct 1300 GTTTTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || || ||||| ||||| || || | || |||| || || || || || ||||| Sbjct 1685 TTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAA 1626 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || |||||| | || | || |||||||| |||||| || || | Sbjct 1625 GATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTCAC--A 1568 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || | || ||| || || | || ||||| ||||| ||||||||||| Sbjct 1567 TTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTA 1508 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 1507 ACAAAGATCTGCAT 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324619186572504