Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3534 145 9e-30 seq1079 145 9e-30 seq2512 125 8e-24 >seq3534 Length=36356 Score = 145 bits (160), Expect = 9e-30 Identities = 385/583 (66%), Gaps = 4/583 (1%) Strand=Plus/Plus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 ||||| ||||| | |||| ||| || | ||| | |||||||| | || || ||| Sbjct 23131 CCAGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATG 23190 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || ||||| ||||| | ||| | ||| |||| | | || ||| || Sbjct 23191 AAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCG 23250 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | || || || || | || | || | ||||| ||||| ||||||| |||||| Sbjct 23251 GTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATA 23310 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| || || ||||| || || ||||| | ||| || || || | || || Sbjct 23311 GCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTAC 23370 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 |||| | ||| || || | ||||| ||| |||||||||||| | ||| || | || Sbjct 23371 ACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACC- 23429 Query 48456 CTAGCT-CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 || ||| | ||| | || || || | || || || | || || || | ||| Sbjct 23430 CTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGC 23489 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 ||| |||| || ||||| || || || || ||||| ||||| |||| | | ||| || Sbjct 23490 ACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAA 23549 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 ||| || |||||||| ||| || || ||||| || | || || || ||||| | Sbjct 23550 ACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGT 23609 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGAT 48693 ||||| |||| || | | | || || |||| ||| || | ||| || | | Sbjct 23610 GAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-T 23668 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 | ||||| | || |||||||| ||||| | || ||||| || Sbjct 23669 GGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 23711 >seq1079 Length=19334 Score = 145 bits (160), Expect = 9e-30 Identities = 385/583 (66%), Gaps = 4/583 (1%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 ||||| ||||| | |||| ||| || | ||| | |||||||| | || || ||| Sbjct 5746 CCAGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATG 5687 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || ||||| ||||| | ||| | ||| |||| | | || ||| || Sbjct 5686 AAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCG 5627 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | || || || || | || | || | ||||| ||||| ||||||| |||||| Sbjct 5626 GTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATA 5567 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| || || ||||| || || ||||| | ||| || || || | || || Sbjct 5566 GCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTAC 5507 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 |||| | ||| || || | ||||| ||| |||||||||||| | ||| || | || Sbjct 5506 ACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACC- 5448 Query 48456 CTAGCT-CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 || ||| | ||| | || || || | || || || | || || || | ||| Sbjct 5447 CTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGC 5388 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 ||| |||| || ||||| || || || || ||||| ||||| |||| | | ||| || Sbjct 5387 ACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAA 5328 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 ||| || |||||||| ||| || || ||||| || | || || || ||||| | Sbjct 5327 ACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGT 5268 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGAT 48693 ||||| |||| || | | | || || |||| ||| || | ||| || | | Sbjct 5267 GAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-T 5209 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 | ||||| | || |||||||| ||||| | || ||||| || Sbjct 5208 GGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 5166 >seq2512 Length=2172 Score = 125 bits (138), Expect = 8e-24 Identities = 347/527 (66%), Gaps = 4/527 (1%) Strand=Plus/Plus Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATT 48271 ||| || | ||| || ||||| ||||| | ||| | ||| |||| | | || ||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 48272 GCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || | || || || || | || | || | ||||| ||||| ||||||| ||| Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 ||| || | |||| || || ||||| || || ||||| | ||| || || || | || Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 || |||| | ||| || || | ||||| ||| |||||||||||| | ||| || | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 48452 TCCACTAGCT-CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 || || ||| | ||| | || || || | || || || | || || || | Sbjct 245 ACC-CTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCA 303 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 |||||| |||| || ||||| || || || || ||||| ||||| |||| | | || Sbjct 304 AAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTA 363 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 | ||||| || |||||||| ||| || || ||||| || | || || || |||| Sbjct 364 GGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCAT 423 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCAT 48689 | | ||||| |||| || | | | || || |||| ||| || | ||| || Sbjct 424 GGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCAC 483 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 | || ||||| | || |||||||| ||||| | || ||||| || Sbjct 484 CG-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562083202970520