Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq779 113 5e-20 >seq779 Length=16055361 Score = 113 bits (124), Expect = 5e-20 Identities = 384/593 (65%), Gaps = 4/593 (1%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || || |||||| ||| | ||| ||||| | || ||||| |||||| || || Sbjct 8446763 AAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAAGTG 8446704 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 | || ||||||||||| | || || | ||| || |||| || || || || || ||| Sbjct 8446703 AGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAGAAG 8446644 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA-CTATAATC 37351 || | ||| || || |||||||| || |||| ||| | | | | || | || Sbjct 8446643 AATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATACGACGCGTCTTTGTTC 8446584 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 | |||| | | |||||| ||||| || ||||| | || ||||| || Sbjct 8446583 CCGA-TCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGCAAAGTCTCAATCGC 8446525 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || ||||| |||| | || ||| | | |||||||||||| || | || Sbjct 8446524 ATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCAATGAGGAGTGAGTA 8446465 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 ||| || ||||| ||||| |||| || || || | ||||| ||||| | |||||||| Sbjct 8446464 CATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAACAACGAGCTTCAGG 8446405 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAG-TTTTCATTAACTATCCCATCACTAG 37590 | |||||| || | | || || | || || || || || || || || ||||| | Sbjct 8446404 GATTTGAACCTCTTGGCAGAAGTTCAT-GCAGAGATTCTCGTTCACGATACCGTCACTGG 8446346 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCC 37650 | || |||||||| ||||| | |||||||| | || | | | | | || Sbjct 8446345 CAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGTCGTTCAGTCCCTCCC 8446286 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCAC 37710 | ||| | | |||||| | || ||||| || || |||||||| || |||| || Sbjct 8446285 AGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACAGCCT 8446226 Query 37711 GTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTA 37763 || || | | ||| ||||| | | ||| || || | |||||||| ||| Sbjct 8446225 TCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATTACAAACCTA 8446173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592289827373720