Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq778 172 4e-38 seq1091 122 7e-23 seq3456 84.2 2e-11 >seq778 Length=21138827 Score = 172 bits (190), Expect = 4e-38 Identities = 173/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || |||||||||||||| || || || ||||| || | || ||| | | | Sbjct 14606165 ACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCC 14606106 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || ||||| |||||||| |||||||| || ||||| ||||| || Sbjct 14606105 ATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTT 14606046 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| |||||||| |||||| |||| | | || || | || ||||||||||||| Sbjct 14606045 ATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAACTTCAAGAGTGAT 14605986 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCG 101478 |||||||| |||||||| || ||||| |||||||| | ||||| Sbjct 14605985 AGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCATTTTAACGCG 14605941 >seq1091 Length=18644 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| || || || ||||| || || || ||||| || ||||| || | Sbjct 1494 TTCCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAG 1435 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || || | |||| || | |||||| || ||||| || | ||| ||||| || || | Sbjct 1434 AGAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGG 1375 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || |||||||| || |||||| | || | || || | || | Sbjct 1374 GAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAA 1315 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 |||| ||||| | ||||| ||||| | ||| || ||||| |||||||| || Sbjct 1314 CTTCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCATTGT 1263 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || |||||||| ||||| || ||||| || | || ||| | |||| || | ||| Sbjct 1697 ATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCAAGTTG 1638 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || | ||||||||| || || ||||||||||| || |||||||| || Sbjct 1637 CTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 1578 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | || || | || |||||||| || | || || || || Sbjct 1577 AGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTCTTTCCTGT 1518 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 1517 GAGAGTCTTAACAAAGATCTGCAT 1494 >seq3456 Length=47684 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || ||||| ||||||||||| | | || | | || || | || Sbjct 38780 ATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTACGACCTTCTTCTAGCTG 38839 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || | || |||||||| || || ||||| || ||||| ||||| || Sbjct 38840 CTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTATCCTGAATCTT 38899 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | || ||| || || || || || || | |||||||| || Sbjct 38900 CGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAATTGTTTTGCCAGT 38959 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| || ||||| Sbjct 38960 GAGGGTTTTCACAAAAATTTGCAT 38983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396260805610551