Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq779 120 6e-22 >seq779 Length=16055361 Score = 120 bits (132), Expect = 6e-22 Identities = 435/676 (64%), Gaps = 11/676 (2%) Strand=Plus/Minus Query 48001 GTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCAC 48060 |||||||||||| | ||||| | ||| | ||||| || || ||| |||| || Sbjct 8446887 GTTCATGCCTATCAAATCAACGGGAAGAGCTTCAGTGAGGAATTCGCACTCAATCTCAAC 8446828 Query 48061 GGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGC 48120 || || | || |||| | || || | || || ||||| | ||||||| Sbjct 8446827 TGCATCACGCATGATCTCGTAGACACGCTTAGCCGACGGCTTGTTCACTACGTGCTTGA- 8446769 Query 48121 ATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGA 48180 ||| || ||| || || || | |||| || || || ||||| || | | | || Sbjct 8446768 --AGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCATTACT 8446711 Query 48181 GAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCC 48240 ||| |||||||||||| | || | || || |||||||| |||| ||||| || || Sbjct 8446710 GAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACC 8446651 Query 48241 AGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT 48300 |||||||| | ||||| || || || ||||| | | ||| | | || |||| Sbjct 8446650 CGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATACGACGCGTC 8446591 Query 48301 CTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 |||| |||||| || ||||| || ||||||||||| | || |||| ||||| Sbjct 8446590 TTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGCAAAGTCTC 8446531 Query 48361 TATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAG 48417 || || |||||| | | || | | || ||||| || | |||| || Sbjct 8446530 AATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCAATGAGGAG 8446471 Query 48418 CTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCT 48477 || ||||||||| ||||| | |||||| | || || || | ||| ||||| | Sbjct 8446470 ---TGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAACAACG 8446414 Query 48478 GGCCTCAAACACCTGCACTTCTGTGGAGAATCTC-TCCAGCAGATTCTCATTGACTATCC 48536 || ||| | || || ||| | |||| || | ||| |||||||| || || || | Sbjct 8446413 AGCTTCAGGGATTTGAACCTCTTGGCAGAAGTTCATGCAG-AGATTCTCGTTCACGATAC 8446355 Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596 | || ||||| ||||| || || || || | ||||| ||||| || | | | Sbjct 8446354 CGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGTCGTTCA 8446295 Query 48597 GAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 | | | |||| | | ||||| || ||| || || ||||| ||||||||||| | Sbjct 8446294 GTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAG 8446235 Query 48657 CGAGTGCTTTTTTGTA 48672 | | || || ||||| Sbjct 8446234 CCACAGCCTTCTTGTA 8446219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931490380325120