Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3534 131 3e-25 seq1079 131 3e-25 seq2512 114 2e-20 >seq3534 Length=36356 Score = 131 bits (144), Expect = 3e-25 Identities = 192/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 221930 TTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGA 221989 ||||||||| |||||||||| || |||| || || | || ||||||| || Sbjct 23077 TTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGG 23136 Query 221990 CACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGG 222049 || | ||| ||| | | |||| | || | || | |||||||||||||| || Sbjct 23137 CATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGA 23196 Query 222050 TCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTT 222109 || || ||||| || ||| |||||||||||| | || |||||| | ||| ||||| Sbjct 23197 TCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTT 23256 Query 222110 TTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA 222169 | | ||| |||| |||| || | |||| |||||| || || ||||| | || | | Sbjct 23257 CTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAA 23316 Query 222170 GCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || ||||| ||||| ||||||||||||||||| Sbjct 23317 GCACCGGGACGCTTATTGCCACCCTGATCCAC 23348 >seq1079 Length=19334 Score = 131 bits (144), Expect = 3e-25 Identities = 192/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 221930 TTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGA 221989 ||||||||| |||||||||| || |||| || || | || ||||||| || Sbjct 5800 TTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCCAGGG 5741 Query 221990 CACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGG 222049 || | ||| ||| | | |||| | || | || | |||||||||||||| || Sbjct 5740 CATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAAAAGA 5681 Query 222050 TCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTT 222109 || || ||||| || ||| |||||||||||| | || |||||| | ||| ||||| Sbjct 5680 TCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGTGTTT 5621 Query 222110 TTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGA 222169 | | ||| |||| |||| || | |||| |||||| || || ||||| | || | | Sbjct 5620 CTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGCAAAA 5561 Query 222170 GCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || ||||| ||||| ||||||||||||||||| Sbjct 5560 GCACCGGGACGCTTATTGCCACCCTGATCCAC 5529 >seq2512 Length=2172 Score = 114 bits (126), Expect = 2e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 222036 TCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCT 222095 |||||||||| || || || ||||| || ||| |||||||||||| | || ||||| Sbjct 1 TCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCT 60 Query 222096 CCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCA 222155 | | ||| ||||| | | ||| |||| |||| || | |||| |||||| || || | Sbjct 61 CAGCTCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTA 120 Query 222156 GATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||| | || | ||| ||||| ||||| ||||||||||||||||| Sbjct 121 GATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCAC 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928802502729920