Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3534 125 9e-24 seq1079 125 9e-24 seq779 93.3 5e-14 >seq3534 Length=36356 Score = 125 bits (138), Expect = 9e-24 Identities = 418/642 (65%), Gaps = 15/642 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||||| ||||| || | | || |||||||| || || | || ||| | Sbjct 23705 CCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAAGCTGCC 23646 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 || ||||| ||| | ||||| || | || ||||| || || | || || ||||| Sbjct 23645 TTTGAGACGTACCATCTAATGTCTCAGAAGTG-GTTCACCCATGCCTCCCCGACTCTCTT 23587 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 |||| | || ||||||| || || ||||| || || ||||| || | | ||||| || Sbjct 23586 CAATTCGGGCACACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGATGA 23527 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | || | |||||||| | || || | | ||||| ||||||||| ||||| Sbjct 23526 CAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGCTGG 23467 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 ||| |||| | | | ||| | | | ||| || ||| || || || Sbjct 23466 GGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCAAGGGTACTTTTATCGCCGGAACCAA 23407 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 |||| |||| |||| | |||| ||||| || || | || ||| || | ||||| Sbjct 23406 TGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCGCTAGGTATGT 23347 Query 75571 AAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 |||| | || ||||| | || | | || | || | ||||| ||||| Sbjct 23346 GGATCAGGGTGGCAATAAGCGTCCC---GGTGCTTTTGCTATATATCTAGAACCCTGGCA 23290 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 | ||| || || ||||| | ||| | || ||| || | || ||| ||| Sbjct 23289 CCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTCGTGC 23230 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 |||||||||||||| | || |||||||| || ||||||||| || ||||| | || | Sbjct 23229 TAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACGATGA 23170 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGAC-GCGGTGGGT 75802 || | ||| || | | ||| || || || || || || | ||| || | ||| Sbjct 23169 TGAGAAGTGGACTTTCATGGATCCTCACGAATGC-CCTGGCCTGGCTGACTGCTG-GGGA 23112 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGT 75844 |||||||| ||||| ||||| || ||||||||| | |||||| Sbjct 23111 GAGGAGTTCGAAGCGCTCTATACCAAGTATGAAAAAGAGGGT 23070 Score = 118 bits (130), Expect = 1e-21 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 76703 GGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTG 76762 ||||| |||||| | ||| | || ||||||||||||||| ||| || | || ||| Sbjct 21979 GGTTCTATTCAACACATCGACGGCATTCCAGATGATATCAAGGCTCTGTATAGGACTGTG 21920 Query 76763 TGGGAAAT-CAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGA 76821 ||||| || | | | |||| | ||||| | || |||||||||| || ||||| || Sbjct 21919 TGGGAGATTCCACA-GAAAACGATTATTGATCTTGCTGCAGATCGTGCTCCTTTCATAGA 21861 Query 76822 TCAAAGTCAAAGTATGAATCTATTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTA 76880 ||| |||||| ||||||| ||| | || ||||| ||| ||| || |||| | Sbjct 21860 TCAGAGTCAATCACTGAATCTCCACATAAAGGAGCCCAACTATGGA-AAGATCACTTCCA 21802 Query 76881 TGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGA 76933 ||||| | |||||||||| |||| || || || ||||||||||| |||||| Sbjct 21801 TGCATTTCTACGCGTGGAGGAAGGGACTGAAGACTGGAATGTACTACCTCCGA 21749 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/278 (67%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT-AACCAAA 75962 ||||||||| | || | ||| ||||||||||||| || || |||| ||||| Sbjct 22932 GGAGACTGGTAATCCCTTCATGGTTTACAAGGATGCCTGCAATC-GAAGTTCCAACCACC 22874 Query 75963 AGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATA 76022 | || |||| ||| ||||| |||| ||||||||||| || ||| | || || | Sbjct 22873 AACATCTGGGTACAGTCAAGTGCTCCAATCTTTGCACTGAGATTATTGAATATAGTTCCC 22814 Query 76023 AGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAG 76082 || ||||| ||||| || |||||||| || ||| | || || || | |||||||| Sbjct 22813 CCGAGGAGACTGCTGTGTGTAATTTGGCGTCCATCTCACTGCCCAACTTTGTCAATGCCA 22754 Query 76083 AGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATC 76142 |||| | || || || | ||| | || | | || | | |||| ||||| Sbjct 22753 AGACGAGAACCTTCGACTTTGATCGGTTGCAGTATGTAACTGGTGTCATCACCAGAAATC 22694 Query 76143 TAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAG 76180 | ||| |||| || || ||| |||||||| || ||| Sbjct 22693 TCAACAGAGTAATAGATAGAGGCTTTTATCCAGTCGAG 22656 >seq1079 Length=19334 Score = 125 bits (138), Expect = 9e-24 Identities = 418/642 (65%), Gaps = 15/642 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||||| ||||| || | | || |||||||| || || | || ||| | Sbjct 5172 CCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAAGCTGCC 5231 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 || ||||| ||| | ||||| || | || ||||| || || | || || ||||| Sbjct 5232 TTTGAGACGTACCATCTAATGTCTCAGAAGTG-GTTCACCCATGCCTCCCCGACTCTCTT 5290 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 |||| | || ||||||| || || ||||| || || ||||| || | | ||||| || Sbjct 5291 CAATTCGGGCACACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGATGA 5350 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | || | |||||||| | || || | | ||||| ||||||||| ||||| Sbjct 5351 CAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGCTGG 5410 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 ||| |||| | | | ||| | | | ||| || ||| || || || Sbjct 5411 GGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCAAGGGTACTTTTATCGCCGGAACCAA 5470 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 |||| |||| |||| | |||| ||||| || || | || ||| || | ||||| Sbjct 5471 TGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCGCTAGGTATGT 5530 Query 75571 AAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 |||| | || ||||| | || | | || | || | ||||| ||||| Sbjct 5531 GGATCAGGGTGGCAATAAGCGTCCC---GGTGCTTTTGCTATATATCTAGAACCCTGGCA 5587 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 | ||| || || ||||| | ||| | || ||| || | || ||| ||| Sbjct 5588 CCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTCGTGC 5647 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 |||||||||||||| | || |||||||| || ||||||||| || ||||| | || | Sbjct 5648 TAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACGATGA 5707 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGAC-GCGGTGGGT 75802 || | ||| || | | ||| || || || || || || | ||| || | ||| Sbjct 5708 TGAGAAGTGGACTTTCATGGATCCTCACGAATGC-CCTGGCCTGGCTGACTGCTG-GGGA 5765 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGT 75844 |||||||| ||||| ||||| || ||||||||| | |||||| Sbjct 5766 GAGGAGTTCGAAGCGCTCTATACCAAGTATGAAAAAGAGGGT 5807 Score = 118 bits (130), Expect = 1e-21 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 76703 GGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTG 76762 ||||| |||||| | ||| | || ||||||||||||||| ||| || | || ||| Sbjct 6898 GGTTCTATTCAACACATCGACGGCATTCCAGATGATATCAAGGCTCTGTATAGGACTGTG 6957 Query 76763 TGGGAAAT-CAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGA 76821 ||||| || | | | |||| | ||||| | || |||||||||| || ||||| || Sbjct 6958 TGGGAGATTCCACA-GAAAACGATTATTGATCTTGCTGCAGATCGTGCTCCTTTCATAGA 7016 Query 76822 TCAAAGTCAAAGTATGAATCTATTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTCTA 76880 ||| |||||| ||||||| ||| | || ||||| ||| ||| || |||| | Sbjct 7017 TCAGAGTCAATCACTGAATCTCCACATAAAGGAGCCCAACTATGGA-AAGATCACTTCCA 7075 Query 76881 TGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGA 76933 ||||| | |||||||||| |||| || || || ||||||||||| |||||| Sbjct 7076 TGCATTTCTACGCGTGGAGGAAGGGACTGAAGACTGGAATGTACTACCTCCGA 7128 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/278 (67%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT-AACCAAA 75962 ||||||||| | || | ||| ||||||||||||| || || |||| ||||| Sbjct 5945 GGAGACTGGTAATCCCTTCATGGTTTACAAGGATGCCTGCAATC-GAAGTTCCAACCACC 6003 Query 75963 AGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATA 76022 | || |||| ||| ||||| |||| ||||||||||| || ||| | || || | Sbjct 6004 AACATCTGGGTACAGTCAAGTGCTCCAATCTTTGCACTGAGATTATTGAATATAGTTCCC 6063 Query 76023 AGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAG 76082 || ||||| ||||| || |||||||| || ||| | || || || | |||||||| Sbjct 6064 CCGAGGAGACTGCTGTGTGTAATTTGGCGTCCATCTCACTGCCCAACTTTGTCAATGCCA 6123 Query 76083 AGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATC 76142 |||| | || || || | ||| | || | | || | | |||| ||||| Sbjct 6124 AGACGAGAACCTTCGACTTTGATCGGTTGCAGTATGTAACTGGTGTCATCACCAGAAATC 6183 Query 76143 TAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAG 76180 | ||| |||| || || ||| |||||||| || ||| Sbjct 6184 TCAACAGAGTAATAGATAGAGGCTTTTATCCAGTCGAG 6221 >seq779 Length=16055361 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 65005 ACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACA-CAAAGTC 65063 ||| | || ||| | ||||||||||| | ||||| ||| ||| | | | ||||| | Sbjct 8446534 ACTTTGCCGTGTGTGAAGAAGAAGGCGGATTGGGCCCTGAGGTGGATCGGGAACAAAGAC 8446593 Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 || || | || ||||| || | |||||||| ||| |||||| | |||||||| || Sbjct 8446594 GCG-TCGTATGCGGAGCGTGTTGTGGCGTTTGCAGCTGTAGAGGGTGTATTCTTCTCGGG 8446652 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 |||||| | | || | ||| |||||||||| ||| | ||||| || || ||| Sbjct 8446653 TTCATTCGCCTCAATCTTCTGGCTGAAGAAGCGTGGTTTAATGCCTGGTCTCACTTTCAG 8446712 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 ||||| | ||| ||| ||||||||||| || Sbjct 8446713 TAATGAGTTGATTAGCCGCGATGAGGGTCTGCA 8446745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596542433711840