Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq778 134 3e-26 seq1091 102 2e-16 seq3456 87.8 4e-12 seq779 84.2 4e-11 >seq778 Length=21138827 Score = 134 bits (148), Expect = 3e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 |||| |||||| | |||||| || || || || | |||| || || ||| || || Sbjct 14606182 ATAACACCACCACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAG 14606123 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | || || |||| || | || || ||||||||||| || | |||||||| Sbjct 14606122 TCCGAGAGAGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCT 14606063 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || || ||||| ||||| || ||||| |||||||| || |||||||| | Sbjct 14606062 GGGGGAATACCTTCCTTATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGC 14606003 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || ||||| ||||| || ||||| |||||||| || || | ||| |||||||||||| Sbjct 14606002 TCAACTTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCATTTTA 14605946 >seq1091 Length=18644 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| ||||| || || | || | ||| || ||| || || ||| Sbjct 1495 ATTCCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCA 1436 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||| || ||||||||||| | | ||||| || || Sbjct 1435 GAGAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGG 1376 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| |||||||| || | ||| | || Sbjct 1375 GGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCA 1316 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| |||||||| || | || || | ||| ||||||||| Sbjct 1315 ACTTCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCATT 1265 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | ||||| ||||| || || ||| || || ||||| Sbjct 1721 ACCACCACGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 1662 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||| || ||||||||||| | | |||||| || || || Sbjct 1661 GAGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGG 1602 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || ||| || ||||| || | ||| | || || Sbjct 1601 AATGCCTTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGAC 1542 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| || |||||||| || || || | || |||| ||| ||||||||| Sbjct 1541 TTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCATT 1493 >seq3456 Length=47684 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| | || | ||||| ||| | ||| || |||||| |||||||| Sbjct 38756 ACCGCCACGAAGACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGA 38815 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || | || || | || ||||||||||| || | || |||||||| || || Sbjct 38816 AAGCGTACGACCTTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGG 38875 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || ||||| || || || || || || || | ||| || || || Sbjct 38876 GATGCCCTCCTTATCCTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTCAAC 38935 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| ||||| | ||||| | ||| || ||||| Sbjct 38936 CTCGAGTGTAATTGTTTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq779 Length=16055361 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877 || || || || ||||||||||| | |||||| || | || || |||||||| ||| Sbjct 8446766 ATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAA 8446707 Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937 || | || |||||||| || | ||| || ||||| || ||||| || || || || Sbjct 8446706 GTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAG 8446647 Query 49938 AAGAATATACCCTCGACACACGCAAATGC 49966 ||||||| |||||| ||| ||||| || Sbjct 8446646 AAGAATACACCCTCTACAGCTGCAAACGC 8446618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984434048473050