Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq778 105 1e-17 >seq778 Length=21138827 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 171836 CATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATA 171895 ||||| |||||| | ||| || || || || || | |||| || || || || || Sbjct 14606183 CATAACACCACCACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTA 14606124 Query 171896 ATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 || || | || || | || || | || || |||||||| || || | ||||| || Sbjct 14606123 GTCCGAGAGAGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATC 14606064 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 || || || ||||| ||||| || ||||| |||||||| || | |||||| | Sbjct 14606063 TGGGGGAATACCTTCCTTATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGG 14606004 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || ||||| ||||| || ||||| |||||||| || || | || |||||||||||| Sbjct 14606003 CTCAACTTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCATTTTA 14605946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905094782369400