Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq778 118 3e-21 seq3534 104 7e-17 seq2512 104 7e-17 seq1079 104 7e-17 >seq778 Length=21138827 Score = 118 bits (130), Expect = 3e-21 Identities = 227/328 (69%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||||| | ||| || ||||||||||||||| | ||| || ||||| ||| Sbjct 8378223 TCCATAGCTTTGATGAGACGGCGTTGAATATAACCAGTTTCGGCTGTCTTGACAGCGGTA 8378164 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTAGCC 302692 ||||| | ||| ||||||||||||| |||||||| || | ||| || ||| || | Sbjct 8378163 TCAATCAAACCTTCACGACCACCCATGGCATGGAAAAAGAACTCAGTTGGAGTC--AGGC 8378106 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG-TA 302751 | ||| | |||| |||| || ||||| | | ||| || | ||| | ||||| | Sbjct 8378105 CAGCAAGATAGGAATTCTCCACAAAACCCCTAGACTCAGGACCGTAGTC-ATCTTGGATG 8378047 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || ||||| | | | || | ||||| || || || || ||||||||| Sbjct 8378046 AAATGGGGAAGGGTTCGATGGCGGAAACCAAAGGGGATTCGTTTACCCTCTACGTTCTGC 8377987 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAGCAT 302869 || |||| || | ||| | || || ||||| |||| | ||||| || |||||| Sbjct 8377986 TGCCCCACACAGGCAATAACTTGGGAGATATT--AATCTTGGAACCCTTTGAACCAGCAA 8377929 Query 302870 TTACCATAATAACAAACCTGTTATTCTT 302897 ||||||||| || |||||| ||| Sbjct 8377928 CAACCATAATATTGAAGTTGTTATACTT 8377901 Score = 87.8 bits (96), Expect = 5e-12 Identities = 155/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 303592 GCTAATAGACGCAGTTCAGTCTCTGATTCTTCATCTTGGGGCATATGTAAATTCATCTCA 303651 |||||| | | | ||||| || || ||| || || |||| ||| | ||||| || Sbjct 8377173 GCTAATTGGCTGATTTCAGCCTTTGTTTCCACAGACTGAGGCAAATGAAGGTTCATTTCG 8377114 Query 303652 TCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCA 303711 || ||||||||||| || || ||||| ||| | | | ||| | || |||||| | Sbjct 8377113 TCGCCGTCAAAATCTGCGTTGTACGGAGAAGTGACGGACAAGTTGAGACGAAAAGTAG-A 8377055 Query 303712 CCCTGCATCATAACACGGGCTTTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGA 303771 || || || |||||| | ||| |||||||| ||||| | || |||||||| ||| Sbjct 8377054 CCATGG--CAAAACACGCACACGATGGCACATCATGGACATCTTATGCAGAGTTGGTTGA 8376997 Query 303772 CGATTGAAAAGCACGGGGTCACCGTTTAATACATGACGATGAAC 303815 |||||||| | ||| ||| | || || | |||||| | ||| Sbjct 8376996 CGATTGAATACCACAAAGTCGTCATTCAACATATGACGCTCAAC 8376953 >seq3534 Length=36356 Score = 104 bits (114), Expect = 7e-17 Identities = 271/409 (66%), Gaps = 11/409 (3%) Strand=Plus/Plus Query 155969 CTCCTCATCGCCG-TGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTG 156027 ||||||| | ||| || |||| | | ||||| | ||| | | | |||||| || | Sbjct 23238 CTCCTCAGCTCCGGTGTTTCTGC-GCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGG 23296 Query 156028 GCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAG 156084 | || ||||| ||||||||| ||| | | | |||||||||||||| ||||||| || Sbjct 23297 GTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAG 23356 Query 156085 CAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGC 156144 | || ||||| | || | ||||| |||| | |||||||| |||||||||||| Sbjct 23357 CGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGG 23416 Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204 ||| | ||| |||| | ||||| || || |||| || || | | Sbjct 23417 CGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCT 23476 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 | || || ||| |||| || | |||| | | ||||| |||||| ||||| | || Sbjct 23477 TTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCA 23536 Query 156265 TTGATAGTAG---ATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTG 156321 ||| ||||| | ||| ||| | |||||| |||||| || | ||||| || | Sbjct 23537 TTGTGAGTAGGAAACAGCTCGA---CATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAG 23593 Query 156322 TAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 | || | ||||| | || |||| | |||||| || ||| ||||| Sbjct 23594 TCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTC 23642 >seq2512 Length=2172 Score = 104 bits (114), Expect = 7e-17 Identities = 271/409 (66%), Gaps = 11/409 (3%) Strand=Plus/Plus Query 155969 CTCCTCATCGCCG-TGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTG 156027 ||||||| | ||| || |||| | | ||||| | ||| | | | |||||| || | Sbjct 56 CTCCTCAGCTCCGGTGTTTCTGC-GCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGG 114 Query 156028 GCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAG 156084 | || ||||| ||||||||| ||| | | | |||||||||||||| ||||||| || Sbjct 115 GTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAG 174 Query 156085 CAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGC 156144 | || ||||| | || | ||||| |||| | |||||||| |||||||||||| Sbjct 175 CGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGG 234 Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204 ||| | ||| |||| | ||||| || || |||| || || | | Sbjct 235 CGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCT 294 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 | || || ||| |||| || | |||| | | ||||| |||||| ||||| | || Sbjct 295 TTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCA 354 Query 156265 TTGATAGTAG---ATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTG 156321 ||| ||||| | ||| ||| | |||||| |||||| || | ||||| || | Sbjct 355 TTGTGAGTAGGAAACAGCTCGA---CATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAG 411 Query 156322 TAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 | || | ||||| | || |||| | |||||| || ||| ||||| Sbjct 412 TCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTC 460 >seq1079 Length=19334 Score = 104 bits (114), Expect = 7e-17 Identities = 271/409 (66%), Gaps = 11/409 (3%) Strand=Plus/Minus Query 155969 CTCCTCATCGCCG-TGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTG 156027 ||||||| | ||| || |||| | | ||||| | ||| | | | |||||| || | Sbjct 5639 CTCCTCAGCTCCGGTGTTTCTGC-GCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGG 5581 Query 156028 GCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAG 156084 | || ||||| ||||||||| ||| | | | |||||||||||||| ||||||| || Sbjct 5580 GTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAG 5521 Query 156085 CAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGC 156144 | || ||||| | || | ||||| |||| | |||||||| |||||||||||| Sbjct 5520 CGGTGCTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGG 5461 Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204 ||| | ||| |||| | ||||| || || |||| || || | | Sbjct 5460 CGATAAAAGTACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCT 5401 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 | || || ||| |||| || | |||| | | ||||| |||||| ||||| | || Sbjct 5400 TTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCA 5341 Query 156265 TTGATAGTAG---ATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTG 156321 ||| ||||| | ||| ||| | |||||| |||||| || | ||||| || | Sbjct 5340 TTGTGAGTAGGAAACAGCTCGA---CATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAG 5284 Query 156322 TAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 | || | ||||| | || |||| | |||||| || ||| ||||| Sbjct 5283 TCGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTC 5235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471748901533691