Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq781 111 2e-18 seq777 91.5 2e-12 >seq781 Length=13122981 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| || ||| ||||| || ||||| |||||||| | || Sbjct 3275411 GCTTGGCCAACTCACCGGGCAAGAGCAGACGCACTGCTGTCTGAATCTCGCGACTTGTGA 3275470 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| ||||||||| || | | ||||| | || || |||| | Sbjct 3275471 TGGTGGACTTCTTGTTATAGTGCGCCAATCGACTCGACTCGGCAGCAATACGCTCGAAGA 3275530 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||||| | ||| ||||||||| |||||| | Sbjct 3275531 TGTCATTCACGAAAGAGTTCATGATGGACATGGCCTTCGAGGAGATGCCAGTGTCGGGAT 3275590 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||| ||||||||||||||| Sbjct 3275591 GAACCTGACGCAGCACCTTGTAGATG 3275616 >seq777 Length=22338478 Score = 91.5 bits (100), Expect = 2e-12 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1592111 CGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTC 1592170 || || || || |||||| ||||| |||| ||| | || || || || ||| Sbjct 7281235 CGAACTGATGATATCTCGAGTTGGGATCAGGAATTTCTCCGTGTTGATCAAGGAACTCTC 7281294 Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230 |||||| | || | ||||| |||||||| || || ||| || |||||| | || Sbjct 7281295 TTTGAGCTCATTTTGGCCGCAAACTACCTTGATATTAAGGGCCTTCTCGATACATGCTGT 7281354 Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290 ||||| || || |||||||||||||| ||| | || ||||| || || || ||||| || Sbjct 7281355 AAGTCGGTTGCTAACATGATCAAGGGGAAGACACCTGAGGAAATTCGAAAAACCTTCAAT 7281414 Query 1592291 ATCAA 1592295 ||||| Sbjct 7281415 ATCAA 7281419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106840238359831