Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1091 109 4e-19 >seq1091 Length=18644 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| ||||| || || | || |||| || |||||||| || || ||| Sbjct 1684 TCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAAG 1625 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || || |||||| | || | || |||||||| | || || || || || Sbjct 1624 ATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTCAC--AT 1567 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || ||| |||||| |||| || ||||||||||| ||||| ||||| | Sbjct 1566 TCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTAA 1507 Query 34965 CAAAGATCTGCAT 34977 ||||||||||||| Sbjct 1506 CAAAGATCTGCAT 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325678339545017