Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq3456 100 4e-16 >seq3456 Length=47684 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||||||||| | || || || | | | Sbjct 38982 TGCAAATTTTTGTGAAAACCCTCACTGGCAAAACAATTACACTCGAGGTTGAGCCGAGTG 38923 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || || || || ||| || ||||| || || ||||||| Sbjct 38922 ATACGATTGAGAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCAAC 38863 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || ||||||||||||| ||||| || |||| || | | ||| | | ||||| |||| Sbjct 38862 AACGACTCATTTTTGCTGGTAAGCAGCTAGAAGAAGGTCGTACGCTTTCTGATTACAATA 38803 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||| || |||||| | ||| Sbjct 38802 TCCAAAAGGAGTCGACTCTACAT 38780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786130599947560