Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq778 176 9e-39 seq1091 165 2e-35 seq3456 147 4e-30 >seq778 Length=21138827 Score = 176 bits (194), Expect = 9e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| || |||||||| ||||| || || || || || ||| | | || Sbjct 14606165 ACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCC 14606106 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||||| || || ||||||||||| | | |||||||||||| || || |||||||| Sbjct 14606105 ATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTT 14606046 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||| || || |||||||||||||| | ||| ||| || ||||| | ||| || Sbjct 14606045 ATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAACTTCAAGAGTGAT 14605986 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || ||||| ||||| ||||||||| Sbjct 14605985 AGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCATT 14605949 >seq1091 Length=18644 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||||||||| || || || || || ||||| ||| | | ||| ||||| ||||| Sbjct 1696 TGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCAAGTTGC 1637 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | ||||| ||||| || || |||||||| ||||||||||| Sbjct 1636 TTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTA 1577 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||| ||||| | || || ||||| | || || ||||| ||||| Sbjct 1576 GCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTCTTTCCTGTG 1517 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| ||||||||| Sbjct 1516 AGAGTCTTAACAAAGATCTGCATT 1493 Score = 158 bits (174), Expect = 2e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| || || || || || || || || || ||||| || | | ||| Sbjct 1481 ACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACC 1422 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| || ||||||||||| || | |||||| ||||| || || |||||||| Sbjct 1421 ATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTT 1362 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| || |||||||| || || ||||| | || || ||||| | ||| || Sbjct 1361 GTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAAT 1302 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || | ||||| ||||| ||||||||| Sbjct 1301 AGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCATT 1265 >seq3456 Length=47684 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| || || || || ||||| |||||||| || | | ||| Sbjct 38768 ACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTACGACC 38827 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||||| || || |||||||| || |||| |||||||||||| || || || ||||| Sbjct 38828 TTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 38887 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||| | || || || |||||||||||| | || || || || | || || Sbjct 38888 ATCCTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAAT 38947 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | || || ||||| || ||||| Sbjct 38948 TGTTTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981781372294977