Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3456 100 3e-16 seq1091 93.3 4e-14 >seq3456 Length=47684 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||||| || ||||| || || ||||||||||| | ||| |||| || || ||| Sbjct 38780 ATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGT--ACGACCTTCTTCTAGC 38837 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || ||||||| || || || || || |||||||| ||||| || ||| Sbjct 38838 TGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTATCCTGAATC 38897 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||||| ||| || | ||||| || |||| || | |||||||| Sbjct 38898 TTCGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAATTGTTTTGCCA 38957 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||| ||||| Sbjct 38958 GTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq1091 Length=18644 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| || | || ||| | || || || |||||||| Sbjct 1462 GTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCA-TCTTCAAGTTGCTTGCC 1404 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || || || ||||| || || |||||||||||||| ||||| ||| Sbjct 1403 AGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTT 1344 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | || ||| ||||||| || |||| || | ||||| ||||| ||||| Sbjct 1343 TACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATAGTTTTACCGGTGAGAGT 1284 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 1283 CTTCACAAAAATCTGCAT 1266 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || || ||||| ||||| || || |||||||||||| Sbjct 1648 TCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTG 1589 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||| | | ||||| || ||| ||||||| || || | || | | Sbjct 1588 TCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATG 1529 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || || || |||||||| Sbjct 1528 GTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483398786225320