Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3534 104 6e-17 seq1079 104 6e-17 seq778 98.7 2e-15 >seq3534 Length=36356 Score = 104 bits (114), Expect = 6e-17 Identities = 304/468 (65%), Gaps = 3/468 (1%) Strand=Plus/Minus Query 110537 AATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTC 110596 ||| || ||||| |||||| ||||| || ||| | || ||| || |||| | || || Sbjct 23538 AATGAAGGATGACAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTC 23479 Query 110597 TAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATAT 110656 || ||| |||| || |||| || | |||||| |||||| || || | ||| Sbjct 23478 AAAGAACGCTGGGGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCAAGGGTACTTTTAT 23419 Query 110657 CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 ||| | | || |||| || | ||| | ||||| ||| | |||| | ||| ||| Sbjct 23418 CGCCGGAACCAATGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCAC 23359 Query 110717 TGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGA 110773 || | |||||| |||| ||||| |||| | || | |||||||| ||||| || Sbjct 23358 CGCTAGGTATGTGGATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGA 23299 Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGA 110833 ||| ||||| | ||| | || | ||| | || || || | ||| ||| ||| || Sbjct 23298 ACCCTGGCACCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGA 23239 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 | || | ||| | |||| || | |||||| | ||| | |||||| | | || Sbjct 23238 GATTCGTGCTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGT 23179 Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 ||| || ||| | |||| || | ||| |||||| | ||||| || |||| Sbjct 23178 TCACGATGATGAGAAGTGGACTTTCATGGATCCTCACGAATGCCCTGGCCTGGCTGACTG 23119 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | ||| | ||||| |||| || || || ||||||||||| || Sbjct 23118 CTGGGGAGAGGAGTTCGAAGCGCTCTATACCAAGTATGAAAAAGAGGG 23071 >seq1079 Length=19334 Score = 104 bits (114), Expect = 6e-17 Identities = 304/468 (65%), Gaps = 3/468 (1%) Strand=Plus/Plus Query 110537 AATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTC 110596 ||| || ||||| |||||| ||||| || ||| | || ||| || |||| | || || Sbjct 5339 AATGAAGGATGACAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTC 5398 Query 110597 TAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATAT 110656 || ||| |||| || |||| || | |||||| |||||| || || | ||| Sbjct 5399 AAAGAACGCTGGGGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCAAGGGTACTTTTAT 5458 Query 110657 CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 ||| | | || |||| || | ||| | ||||| ||| | |||| | ||| ||| Sbjct 5459 CGCCGGAACCAATGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCAC 5518 Query 110717 TGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGA 110773 || | |||||| |||| ||||| |||| | || | |||||||| ||||| || Sbjct 5519 CGCTAGGTATGTGGATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGA 5578 Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGA 110833 ||| ||||| | ||| | || | ||| | || || || | ||| ||| ||| || Sbjct 5579 ACCCTGGCACCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGA 5638 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 | || | ||| | |||| || | |||||| | ||| | |||||| | | || Sbjct 5639 GATTCGTGCTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGT 5698 Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 ||| || ||| | |||| || | ||| |||||| | ||||| || |||| Sbjct 5699 TCACGATGATGAGAAGTGGACTTTCATGGATCCTCACGAATGCCCTGGCCTGGCTGACTG 5758 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | ||| | ||||| |||| || || || ||||||||||| || Sbjct 5759 CTGGGGAGAGGAGTTCGAAGCGCTCTATACCAAGTATGAAAAAGAGGG 5806 >seq778 Length=21138827 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 304883 AATTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC---AG 304939 || || ||||||||| |||| || | || |||||||| ||| |||| | ||| || Sbjct 8376545 AACTTGCAATATCATGTTGCCACCCTTATTGATAATGACATTCCTGG---TTTGCCCAAG 8376601 Query 304940 GCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAG 304999 || ||||| || || |||||| | ||| ||||| || || | ||||| |||| Sbjct 8376602 GCTATTCAAAAGTCCGGAAGACCTCTTAAGTCTATTAAACAGCGTCTAAAAGGCAAAGCT 8376661 Query 305000 GGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATC 305059 ||||||||| |||| || | ||||| ||||||||||| ||| ||| ||| || || Sbjct 8376662 GGTCGTATTAGAGGCAACTTGATGGGCAAACGTGTTGACTTTTCTGCTCGAACAGTCATT 8376721 Query 305060 ACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCC 305100 || ||||| || | | ||| || || | |||||||| Sbjct 8376722 ACTGCTGATCCTAATCTGGCCCTTGATCAAGTTGGAGTTCC 8376762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186757404399923