Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1091 87.8 4e-12 >seq1091 Length=18644 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| || ||| | ||||| || || Sbjct 1269 CAGATTTTTGTGAAGACTCTCACCGGTAAAACTATTACTCTCGAAGTTGAGCCCAGCGAT 1328 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| || ||||| ||| || ||| ||| Sbjct 1329 ACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAACAA 1388 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || ||||| | |||||||| | || | | || |||||| || Sbjct 1389 CGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTCTCTGACTACAACATC 1448 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || |||||| | || ||| | || || Sbjct 1449 CAAAAGGAGTCCACACTTCACTTGGTATTGCGTCTACG 1486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181765637406203