Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1091 95.1 1e-14 >seq1091 Length=18644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || |||||||| || | || || ||||||||||| | ||| || ||| | Sbjct 1493 AATGCAGATCTTTGTTAAGACTCTCACAGGAAAGACCATTACACTTGAAGTCGAGCCCAG 1552 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| | ||| | ||||| || ||| ||||| |||||| | ||| || || Sbjct 1553 CGATACCATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1612 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | ||||| | ||| ||||| ||| | |||||| | ||| | || ||||| Sbjct 1613 ACAGCGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACTCTCTCTGACTACAA 1672 Query 106439 CATACAAAAAGAATCTACACTACAT 106463 ||| ||||| |||||||| |||||| Sbjct 1673 CATCCAAAAGGAATCTACTCTACAT 1697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402311736942944