Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq779 113 7e-20 >seq779 Length=16055361 Score = 113 bits (124), Expect = 7e-20 Identities = 198/286 (69%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 161408 GCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCC 161467 ||||| ||||||| ||||||||||| || || |||| || ||| ||| |||| Sbjct 11473938 GCTAAGCTCTATGCCTATTGGATTGTTGTAAATTATCGAGAAAGCTATAATATGTTCGCC 11473997 Query 161468 AGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGT 161527 ||| ||||||||| || || || ||| ||||| || || ||||| || || || || Sbjct 11473998 TGTAATGGTATTCTCTTTAATCACGAGAGTCCACGCCGAGGAGAGACGTTTGTCACTCGC 11474057 Query 161528 AAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTA-CAGGATTGTCTATACCTAGG 161586 || || || | | | | | || |||| ||| | | | || || | | | || || Sbjct 11474058 AAAATCACCCGTGCAGTCGCTCGAATTA-AACACGGCAAGCAAGAAGTTGTTGAACTTGG 11474116 Query 161587 TAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTT 161646 |||||| || | ||| |||||||| |||||| ||||||||| | ||||||||| | Sbjct 11474117 TAATCTCAATGCTGAACGTGATTGGGGCTATGCTGGAGACTATGTTTATGCTATGTGGCT 11474176 Query 161647 GATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGT 161692 ||| ||||||| || || | ||||| || |||||| | ||| Sbjct 11474177 TATGCTACAACAAGACGAACCCGTTGACTTAGTAATTGCCTCTGGT 11474222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729896360830840