Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3534 282 6e-71 seq1079 282 6e-71 seq2512 226 4e-54 seq779 214 2e-50 >seq3534 Length=36356 Score = 282 bits (312), Expect = 6e-71 Identities = 448/637 (70%), Gaps = 4/637 (1%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||||||||||| | ||||| ||| |||||| || |||||||| ||| ||| || Sbjct 23073 CTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCC 23132 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| ||||| | ||| ||| || | |||| |||||||| | ||| | | ||| || Sbjct 23133 AGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAA 23192 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||||| |||||||| ||||| | |||||||||||| | | | | || ||| ||| || Sbjct 23193 AAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGT 23252 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 ||| | || || | |||| || | ||||| ||||| |||||||||||||| || Sbjct 23253 GTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGC 23312 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | || || || ||||| || |||||||| | || || || ||| |||| || || Sbjct 23313 AAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACAC 23372 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 || ||||| |||| | ||||| |||| |||||| ||||| | ||| || | || || Sbjct 23373 TCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACC-CT 23431 Query 69849 TGC-GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 ||| |||||| | || | || || | || || || | || ||||| | ||||| Sbjct 23432 TGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCAC 23491 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | |||| | ||| || || |||||||| || || ||||| |||| | || || |||| Sbjct 23492 ATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAAC 23551 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 |||| ||||||||| || | || |||| ||| || | || || || || || |||| Sbjct 23552 AGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGA 23611 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGA 70086 |||| || | ||| | |||| ||| || |||| || | ||| | ||| ||| | || Sbjct 23612 ACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TGG 23670 Query 70087 ATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 || || | | |||||||| ||||| ||||| |||| Sbjct 23671 ATACCCAAGGACACACGCATAAACATGTGCTGGGGTC 23707 Score = 111 bits (122), Expect = 2e-19 Identities = 287/432 (66%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 68404 GTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTT 68463 || || || |||||||| || || ||||| || ||||| ||||||||||||| Sbjct 21747 GTTCGGAGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAA 21806 Query 68464 GTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATG 68523 || | || ||| | || || ||| || | ||||| |||||||| ||||| ||| Sbjct 21807 GTGATCTTTCCATAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATG 21866 Query 68524 AAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTC 68583 |||| | | |||||| || | | ||||| | || || ||||| ||||| | |||| Sbjct 21867 AAAGGAGCACGATCTGCAGCAAGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTC 21926 Query 68584 TTAAAAATCTGTTTGATATCATCTGGAAGGC--TCG-TATTTTGAATGGATCCACCATCG 68640 || | | |||||||||||||||| || ||| | | |||||| || || | | Sbjct 21927 CTATACAGAGCCTTGATATCATCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTG 21986 Query 68641 GATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTC---TCCGTTAAAACTCTA 68697 | |||||| |||| | ||| ||| | | | | || | | |||| Sbjct 21987 GCAATAATTGCCAATTTGAGGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTC 22043 Query 68698 AGGAGATGCGG--ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATAT 68755 | | ||| || ||| || || || || || ||||| | || | ||| | ||| || Sbjct 22044 A--ACATGTGGCTATTGACAATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACAT 22101 Query 68756 TACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTG 68815 |||| ||| ||||| || ||| | ||||| || |||||||||||||||||||| | Sbjct 22102 TACTCGTAATGGGTTCAGTTGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGG 22161 Query 68816 GCATAGGTGCCA 68827 |||| |||||| Sbjct 22162 GCATTAGTGCCA 22173 >seq1079 Length=19334 Score = 282 bits (312), Expect = 6e-71 Identities = 448/637 (70%), Gaps = 4/637 (1%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||||||||||| | ||||| ||| |||||| || |||||||| ||| ||| || Sbjct 5804 CTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCC 5745 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| ||||| | ||| ||| || | |||| |||||||| | ||| | | ||| || Sbjct 5744 AGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAA 5685 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||||| |||||||| ||||| | |||||||||||| | | | | || ||| ||| || Sbjct 5684 AAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGT 5625 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 ||| | || || | |||| || | ||||| ||||| |||||||||||||| || Sbjct 5624 GTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGC 5565 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | || || || ||||| || |||||||| | || || || ||| |||| || || Sbjct 5564 AAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACAC 5505 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 || ||||| |||| | ||||| |||| |||||| ||||| | ||| || | || || Sbjct 5504 TCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACC-CT 5446 Query 69849 TGC-GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 ||| |||||| | || | || || | || || || | || ||||| | ||||| Sbjct 5445 TGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCAC 5386 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | |||| | ||| || || |||||||| || || ||||| |||| | || || |||| Sbjct 5385 ATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAAC 5326 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 |||| ||||||||| || | || |||| ||| || | || || || || || |||| Sbjct 5325 AGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGA 5266 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGA 70086 |||| || | ||| | |||| ||| || |||| || | ||| | ||| ||| | || Sbjct 5265 ACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TGG 5207 Query 70087 ATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 || || | | |||||||| ||||| ||||| |||| Sbjct 5206 ATACCCAAGGACACACGCATAAACATGTGCTGGGGTC 5170 Score = 111 bits (122), Expect = 2e-19 Identities = 287/432 (66%), Gaps = 13/432 (3%) Strand=Plus/Minus Query 68404 GTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTT 68463 || || || |||||||| || || ||||| || ||||| ||||||||||||| Sbjct 7130 GTTCGGAGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAA 7071 Query 68464 GTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATG 68523 || | || ||| | || || ||| || | ||||| |||||||| ||||| ||| Sbjct 7070 GTGATCTTTCCATAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATG 7011 Query 68524 AAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTC 68583 |||| | | |||||| || | | ||||| | || || ||||| ||||| | |||| Sbjct 7010 AAAGGAGCACGATCTGCAGCAAGATCAATAATCGTTTTCTGTGGAATCTCCCACACAGTC 6951 Query 68584 TTAAAAATCTGTTTGATATCATCTGGAAGGC--TCG-TATTTTGAATGGATCCACCATCG 68640 || | | |||||||||||||||| || ||| | | |||||| || || | | Sbjct 6950 CTATACAGAGCCTTGATATCATCTGGAATGCCGTCGATGTGTTGAATAGAACCCTGGTTG 6891 Query 68641 GATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTC---TCCGTTAAAACTCTA 68697 | |||||| |||| | ||| ||| | | | | || | | |||| Sbjct 6890 GCAATAATTGCCAATTTGAGGGCCTCAGACCAGA---TACCCAGATCGATGAGGTCTCTC 6834 Query 68698 AGGAGATGCGG--ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATAT 68755 | | ||| || ||| || || || || || ||||| | || | ||| | ||| || Sbjct 6833 A--ACATGTGGCTATTGACAATCTGGAAATCTCCAGAAAGAACACGACGCGAAAAAACAT 6776 Query 68756 TACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTG 68815 |||| ||| ||||| || ||| | ||||| || |||||||||||||||||||| | Sbjct 6775 TACTCGTAATGGGTTCAGTTGACTCAGTGTTTCCGAGGATTTGAGCAGTTGATGCAGTGG 6716 Query 68816 GCATAGGTGCCA 68827 |||| |||||| Sbjct 6715 GCATTAGTGCCA 6704 >seq2512 Length=2172 Score = 226 bits (250), Expect = 4e-54 Identities = 367/523 (70%), Gaps = 4/523 (1%) Strand=Plus/Plus Query 69603 CATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATT 69662 ||| || ||||| |||||||| ||||| | |||||||||||| | | | | || ||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 69663 TCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 69722 ||| || ||| | || || | |||| || | ||||| ||||| ||||||||||| Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 69723 TATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATT 69782 ||| || | | || || || ||||| || |||||||| | || || || ||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 69783 ATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACT 69842 || |||| ||||| |||| | ||||| |||| |||||| ||||| | ||| || | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 69843 TCCTCTTGC-GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTA 69901 || ||||| |||||| | || | || || | || || || | || ||||| | Sbjct 245 ACC-CTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCA 303 Query 69902 GAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAA 69961 |||||| |||| | ||| || || |||||||| || || ||||| |||| | || | Sbjct 304 AAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTA 363 Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 | |||||||| ||||||||| || | || |||| ||| || | || || || || | Sbjct 364 GGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCAT 423 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCAC 70080 | |||||||| || | ||| | |||| ||| || |||| || | ||| | ||| ||| Sbjct 424 GGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCAC 483 Query 70081 TGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 | || || || | | |||||||| ||||| ||||| |||| Sbjct 484 CG-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTC 525 >seq779 Length=16055361 Score = 214 bits (236), Expect = 2e-50 Identities = 430/635 (68%), Gaps = 7/635 (1%) Strand=Plus/Minus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 || || || || ||||| ||||| ||| ||| || |||||||| | ||||| || || Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 ||| || ||||| |||||||||| ||||||||| || ||||| || || | || || Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 || || || ||||| | || ||||| |||||||| || |||| | ||| | || Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATACGAC 8446596 Query 39782 GTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 | || || | |||||| || | |||||||| || |||||||| ||||| |||| Sbjct 8446595 GCGTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGCAAA 8446536 Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 || || || ||||| ||||| | | | || ||||| ||||| ||||| || Sbjct 8446535 GTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCAGGCTCTTTCACATAAGTATCAATG 8446476 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | || ||||| || || ||||| || |||| || || || | || || ||||| Sbjct 8446475 AGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAACAA 8446416 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACAAAA--TCTTTCCGCCAAATTTTCATTCACTA 40016 | ||||||| ||||| |||||| || || || | | | | ||| || ||||| | Sbjct 8446415 CGAGCTTCAGGGATTTGAACCTCTTGGCAGAAGTTCATGCAG--AGATTCTCGTTCACGA 8446358 Query 40017 TTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTG 40076 | || ||||| || || || || |||| || || ||||||| || || Sbjct 8446357 TACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGTCGT 8446298 Query 40077 TCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACG 40136 ||| | | ||||||| ||| |||||| | | || || || || | ||||| || | Sbjct 8446297 TCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGG 8446238 Query 40137 ACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAA 40196 | ||| | ||||| ||||| | | ||| ||||| | ||||| || || | || |||| Sbjct 8446237 AAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATTACAA 8446178 Query 40197 ATCTATTTGGATTTTTTGCAAGGATGGGTTCCATA 40231 | ||| ||||| ||||||||||||| ||| Sbjct 8446177 ACCTACCGGGATTGGGCTCAAGGATGGGTTCGATA 8446143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686877519890520