Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3456 95.1 1e-14 seq1091 82.4 6e-11 >seq3456 Length=47684 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||||| || || || ||||| |||||||| || | | || | ||||| ||||| Sbjct 38780 ATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTACGACCTTCTTCTAGCTG 38839 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 ||||| || ||||||| || |||||||| || || | ||||| ||||| ||||| Sbjct 38840 CTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTATCCTGAATCTT 38899 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 |||| | | || | || || | | ||||| || || || || | |||||| || Sbjct 38900 CGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAATTGTTTTGCCAGT 38959 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 || ||||||||||| ||||||||| Sbjct 38960 GAGGGTTTTCACAAAAATTTGCATA 38984 >seq1091 Length=18644 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||||||||| || | || || || ||||| || |||||||| | | | || | Sbjct 1480 CGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCA 1421 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || || || | || ||||| ||||| || || || | || || || Sbjct 1420 TCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTG 1361 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| || | | || | || || ||| |||||||| ||||| ||| Sbjct 1360 TCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATA 1301 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || ||||| |||||||| || ||||| Sbjct 1300 GTTTTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424915533311016