Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq779 89.7 6e-13 seq3534 86.0 8e-12 seq1079 86.0 8e-12 >seq779 Length=16055361 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || ||||||||||| ||| ||| | ||||| ||| ||||| ||||| | ||| Sbjct 8446745 TGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAAGTGAGACCAGGCATTAAACCA 8446686 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 |||||||||| ||| | || | | |||||| || |||||||| | |||||| ||| Sbjct 8446685 CGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAGAAGAATACACCCTCTACAGCT 8446626 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTGC 122849 |||||||| | || || || || | || || | ||||| | | ||| ||| || Sbjct 8446625 GCAAACGCCACAACACGCTCCGCATACGA-CGCGTCTTTGTTCCCGATCCACCTCAGGGC 8446567 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882 ||| | ||||||||||| | ||| || | ||| Sbjct 8446566 CCAATCCGCCTTCTTCTTCACACACGGCAAAGT 8446534 >seq3534 Length=36356 Score = 86.0 bits (94), Expect = 8e-12 Identities = 149/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 110362 TCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGA 110421 |||||| |||||||| || ||||| ||||| | |||| ||||| | |||||| |||| Sbjct 21749 TCGGAGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGT 21808 Query 110422 GAGCTTGGACATCGTTGGACTT-TCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGA 110480 || ||| ||| ||||| || | ||| ||| |||| |||||| || || |||| Sbjct 21809 GATCTTTC-CATAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGA 21867 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTT---AATTTCCCAAACTG 110537 | | | || | ||| || | |||||| | || || ||| ||| ||||| || | Sbjct 21868 AAGGAGCACGATCTGCAGCAAGATCAATAA--TCGTTT-TCTGTGGAATCTCCCACACAG 21924 Query 110538 TGCGATAGAGATTCTTGATATCATCTGGGAT 110568 | | ||| ||| ||||||||||||||| || Sbjct 21925 TCCTATACAGAGCCTTGATATCATCTGGAAT 21955 >seq1079 Length=19334 Score = 86.0 bits (94), Expect = 8e-12 Identities = 149/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 110362 TCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGA 110421 |||||| |||||||| || ||||| ||||| | |||| ||||| | |||||| |||| Sbjct 7128 TCGGAGGTAGTACATTCCAGTCTTCAGTCCCTTCCTCCACGCGTAGAAATGCATGGAAGT 7069 Query 110422 GAGCTTGGACATCGTTGGACTT-TCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGA 110480 || ||| ||| ||||| || | ||| ||| |||| |||||| || || |||| Sbjct 7068 GATCTTTC-CATAGTTGGGCTCCTTTATGTGGAGATTCAGTGATTGACTCTGATCTATGA 7010 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTT---AATTTCCCAAACTG 110537 | | | || | ||| || | |||||| | || || ||| ||| ||||| || | Sbjct 7009 AAGGAGCACGATCTGCAGCAAGATCAATAA--TCGTTT-TCTGTGGAATCTCCCACACAG 6953 Query 110538 TGCGATAGAGATTCTTGATATCATCTGGGAT 110568 | | ||| ||| ||||||||||||||| || Sbjct 6952 TCCTATACAGAGCCTTGATATCATCTGGAAT 6922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628003400992800