Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3534 136 5e-27 seq1079 136 5e-27 seq2512 122 1e-22 seq781 84.2 3e-11 >seq3534 Length=36356 Score = 136 bits (150), Expect = 5e-27 Identities = 424/648 (65%), Gaps = 9/648 (1%) Strand=Plus/Plus Query 118923 CGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG 118982 || ||||||| || ||||| || ||||| ||||| ||||| || ||| | || | Sbjct 23068 CGACCCTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCC 23127 Query 118983 AGCCCTGGTGCCTTA-TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 119041 || || || || || | || | || || ||| | || | || | ||||| || Sbjct 23128 AGGCCAGG-GCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTG 23186 Query 119042 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 119101 |||||| || || || |||||||| ||| | |||||||| | | ||| || ||| | Sbjct 23187 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 23246 Query 119102 CCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 119160 || || || | |||| ||||| || | || || ||| | |||||| ||||| || | Sbjct 23247 TCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGAT 23305 Query 119161 ACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGT 119217 | | || | | || ||| | ||| |||| | |||||||| || ||| | Sbjct 23306 ATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTAT 23365 Query 119218 TAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAG 119277 | | || || ||||| |||| | |||| ||||| ||||| || || ||| || Sbjct 23366 TGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAG 23425 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 ||| | | | || | | | |||| ||||| || ||||||||| Sbjct 23426 TACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCA 23485 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 || || | |||| | ||||||| || || || |||| |||| ||| || | Sbjct 23486 AAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTA 23545 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGT 119457 |||| ||||||||||||||||| | ||||| || | ||||||||||| || | || | Sbjct 23546 GGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCAT 23605 Query 119458 GGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 119516 || ||||| || | || ||||| | ||| ||||| ||| | || | || || Sbjct 23606 GGGTGAAC-CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCA 23664 Query 119517 CCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 119564 ||||| ||||| | || || ||||||||||||| |||||| | ||| Sbjct 23665 CCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 23712 >seq1079 Length=19334 Score = 136 bits (150), Expect = 5e-27 Identities = 424/648 (65%), Gaps = 9/648 (1%) Strand=Plus/Minus Query 118923 CGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG 118982 || ||||||| || ||||| || ||||| ||||| ||||| || ||| | || | Sbjct 5809 CGACCCTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCC 5750 Query 118983 AGCCCTGGTGCCTTA-TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 119041 || || || || || | || | || || ||| | || | || | ||||| || Sbjct 5749 AGGCCAGG-GCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTG 5691 Query 119042 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 119101 |||||| || || || |||||||| ||| | |||||||| | | ||| || ||| | Sbjct 5690 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 5631 Query 119102 CCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 119160 || || || | |||| ||||| || | || || ||| | |||||| ||||| || | Sbjct 5630 TCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGAT 5572 Query 119161 ACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGGCGT 119217 | | || | | || ||| | ||| |||| | |||||||| || ||| | Sbjct 5571 ATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTAT 5512 Query 119218 TAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAG 119277 | | || || ||||| |||| | |||| ||||| ||||| || || ||| || Sbjct 5511 TGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAG 5452 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 ||| | | | || | | | |||| ||||| || ||||||||| Sbjct 5451 TACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCA 5392 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 || || | |||| | ||||||| || || || |||| |||| ||| || | Sbjct 5391 AAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTA 5332 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGT 119457 |||| ||||||||||||||||| | ||||| || | ||||||||||| || | || | Sbjct 5331 GGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCAT 5272 Query 119458 GGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 119516 || ||||| || | || ||||| | ||| ||||| ||| | || | || || Sbjct 5271 GGGTGAACC-ACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCA 5213 Query 119517 CCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 119564 ||||| ||||| | || || ||||||||||||| |||||| | ||| Sbjct 5212 CCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 5165 >seq2512 Length=2172 Score = 122 bits (134), Expect = 1e-22 Identities = 349/531 (66%), Gaps = 7/531 (1%) Strand=Plus/Plus Query 119039 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC 119098 || |||||| || || || |||||||| ||| | |||||||| | | ||| || || Sbjct 2 CTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTC 61 Query 119099 ATCCCCC-TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 119157 | | || || || | |||| ||||| || | || || ||| | |||||| ||||| | Sbjct 62 AGCTCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTA 120 Query 119158 GGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTTACATACCTCGCAGTGG 119214 | || | || | | || ||| | ||| |||| | |||||||| || ||| Sbjct 121 GATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGC 180 Query 119215 CGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATAC 119274 || | || || ||||| |||| | |||| ||||| ||||| || || ||| Sbjct 181 TATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAA 240 Query 119275 GAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 119334 || ||| | | | || | | | |||| ||||| || |||||||| Sbjct 241 AAGTACCCTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGA 300 Query 119335 TTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 119394 | || || | |||| | ||||||| || || || |||| |||| ||| || Sbjct 301 TCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGA 360 Query 119395 TGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCG 119454 ||||| ||||||||||||||||| | ||||| || | ||||||||||| || | | Sbjct 361 GTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGG 420 Query 119455 CGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCT 119513 | ||| ||||| || | || ||||| | ||| ||||| ||| | || | || Sbjct 421 CATGGGTGAAC-CACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCA 479 Query 119514 TCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 119564 || ||||| ||||| | || || ||||||||||||| |||||| | ||| Sbjct 480 TCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCC 530 >seq781 Length=13122981 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 179968 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 180027 || || ||||| || |||||||||| ||||| ||||||||||| || || ||||| || Sbjct 8952983 GGAAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACCGCAAGGGTTTTG 8952924 Query 180028 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTG 180087 || || || ||||| || | ||||| ||||| || || | || || || | | Sbjct 8952923 GCTGAGTCTCCCTCGGTGAGAATGAGGGTACATTTAATTGAATTCTTTGTTCCCGCATCG 8952864 Query 180088 TTCGCGTCGTCCAACTTGGGAATACC 180113 ||||| || |||| ||| || ||||| Sbjct 8952863 TTCGCATCATCCAGCTTTGGGATACC 8952838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618407038007080