Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3534 150 2e-31 seq1079 150 2e-31 seq781 104 3e-17 seq779 95.1 1e-14 >seq3534 Length=36356 Score = 150 bits (166), Expect = 2e-31 Identities = 427/645 (66%), Gaps = 17/645 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||||| ||||| ||| || | ||||| || || || || | || ||| | Sbjct 23705 CCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAAGCTGCC 23646 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 || ||||| ||| | ||||| || | || ||||| || || | || || ||||| Sbjct 23645 TTTGAGACGTACCATCTAATGTCTCAGAAGTG-GTTCACCCATGCCTCCCCGACTCTCTT 23587 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||| | || ||||||| || |||||||| || || ||||| || | | ||||| || Sbjct 23586 CAATTCGGGCACACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGATGA 23527 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | |||||||| | || || | | ||||| ||||||||| ||||| Sbjct 23526 CAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGCTGG 23467 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||| |||| | | | ||| | | | ||| || ||| || || || Sbjct 23466 GGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCAAGGGTACTTTTATCGCCGGAACCAA 23407 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 |||| |||| |||| | |||| ||||| || || | || ||| || | ||||| Sbjct 23406 TGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCGCTAGGTATGT 23347 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 |||| | ||| ||||| || || | || | ||||| || || ||||| Sbjct 23346 GGATCAGGGTGGCAATAAGCGTCCC---GGTGCTTTTGCTATATATCTAGAACCCTGGCA 23290 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 | | ||| || || ||||| | ||| |||| ||| || | |||||| || || Sbjct 23289 CCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTCG-TG 23231 Query 104695 CC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | | |||||||| | |||||||||||||| ||||| |||||| |||| ||| | || Sbjct 23230 CTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACGATG 23171 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 || || ||| || || | ||| || || || ||||| || | || ||| | ||| Sbjct 23170 ATGAGAAGTGGACTTTCATGGATCCTCACGAATGC-CCTGGCCTGGCTGACTGCTG-GGG 23113 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 |||||||| ||||| || || || ||||| || |||| ||||| Sbjct 23112 AGAGGAGTTCGAAGCGCTCTATACCAAGTATGAAAAAGAGGGTCG 23068 >seq1079 Length=19334 Score = 150 bits (166), Expect = 2e-31 Identities = 427/645 (66%), Gaps = 17/645 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||||| ||||| ||| || | ||||| || || || || | || ||| | Sbjct 5172 CCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAAGCTGCC 5231 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 || ||||| ||| | ||||| || | || ||||| || || | || || ||||| Sbjct 5232 TTTGAGACGTACCATCTAATGTCTCAGAAGTG-GTTCACCCATGCCTCCCCGACTCTCTT 5290 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||| | || ||||||| || |||||||| || || ||||| || | | ||||| || Sbjct 5291 CAATTCGGGCACACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGATGA 5350 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | |||||||| | || || | | ||||| ||||||||| ||||| Sbjct 5351 CAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGCTGG 5410 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||| |||| | | | ||| | | | ||| || ||| || || || Sbjct 5411 GGGCGTTGGCCTTAATGTTCATTGTATTCGTAGCAAGGGTACTTTTATCGCCGGAACCAA 5470 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 |||| |||| |||| | |||| ||||| || || | || ||| || | ||||| Sbjct 5471 TGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCGCTAGGTATGT 5530 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 |||| | ||| ||||| || || | || | ||||| || || ||||| Sbjct 5531 GGATCAGGGTGGCAATAAGCGTCCC---GGTGCTTTTGCTATATATCTAGAACCCTGGCA 5587 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 | | ||| || || ||||| | ||| |||| ||| || | |||||| || || Sbjct 5588 CCCTGATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTCG-TG 5646 Query 104695 CC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | | |||||||| | |||||||||||||| ||||| |||||| |||| ||| | || Sbjct 5647 CTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACGATG 5706 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 || || ||| || || | ||| || || || ||||| || | || ||| | ||| Sbjct 5707 ATGAGAAGTGGACTTTCATGGATCCTCACGAATGC-CCTGGCCTGGCTGACTGCTG-GGG 5764 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 |||||||| ||||| || || || ||||| || |||| ||||| Sbjct 5765 AGAGGAGTTCGAAGCGCTCTATACCAAGTATGAAAAAGAGGGTCG 5809 >seq781 Length=13122981 Score = 104 bits (114), Expect = 3e-17 Identities = 136/185 (74%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 169324 AGAGGCATCGCGAACATTCTTACACTT--CCCACGAAGAGGGAAGACACCGTAGTGATCA 169381 |||||| ||||| ||||| | || || ||| || || |||||||| || ||||| Sbjct 8953020 AGAGGCTTCGCGTACATT-TAGCAATTTACCCTTCAAC-GGAAAGACACCATATCGATCA 8952963 Query 169382 CGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACG 169441 ||||| || || |||||||| || || || || || || || ||||| |||||||||| Sbjct 8952962 CGACCGACCACTGAGAGACCAGCCACCGCAAGGGTTTTGGCTGAGTCTCCCTCGGTGAGA 8952903 Query 169442 ATGAGCGTACATTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGA 169501 ||||| |||||||| || | || ||||| | |||||||||||||| || || Sbjct 8952902 ATGAGGGTACATTTAATTGAATTCTTTGTTCCCGCATCGTTCGCATCATCCAGCTTTGGG 8952843 Query 169502 ATACC 169506 ||||| Sbjct 8952842 ATACC 8952838 >seq779 Length=16055361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGCGTTC 94796 |||||| | | ||||| ||||||||||| ||| |||| | | |||||| |||| || Sbjct 8446540 CCGTGTGTGAAGAAGAAGGCGGATTGGGCCCTGAGGTGGATCGGGAACAAAGACGCG-TC 8446598 Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 | ||| ||||| | | || ||||| ||| |||||| | |||||||| ||||| || Sbjct 8446599 GTATGCGGAGCGTGTTGTGGCGTTTGCAGCTGTAGAGGGTGTATTCTTCTCGGGTTCATT 8446658 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 94902 | | | || | ||||| |||||||| ||| | ||||| |||||| Sbjct 8446659 CGCCTCAATCTTCTGGCTGAAGAAGCGTGGTTTAATGCCTGGTCTC 8446704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583234239761320