Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3534 163 3e-35 seq1079 163 3e-35 seq2512 149 7e-31 >seq3534 Length=36356 Score = 163 bits (180), Expect = 3e-35 Identities = 396/589 (67%), Gaps = 8/589 (1%) Strand=Plus/Plus Query 79323 CAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTC 79382 |||||| ||||| ||||| || ||| | ||| | ||| || | | |||| ||| Sbjct 23127 CAGGCCAGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTG 23186 Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 |||||| || || || ||||| || ||| ||||| || | ||| |||||||| | Sbjct 23187 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 23246 Query 79443 GCCC-TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGAT 79501 || || ||| | |||||||| | || | || || || | |||||| || || |||| Sbjct 23247 TCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGAT 23305 Query 79502 AGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGT 79561 | || || || | ||| ||||| ||| ||||| | || |||| || ||| | | Sbjct 23306 ATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTAT 23365 Query 79562 TGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTG 79621 || | |||||||||||||| || | ||| | || | || || || ||| ||| | Sbjct 23366 TGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAG 23425 Query 79622 TACCGCTCGC-CCGAAT-GTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGAT 79679 |||| || || ||||| || || | | || | |||||| | ||| ||||| Sbjct 23426 TACC-CTTGCTACGAATACAATGAACA-TTAAGGCCAACGCCCCCAGCGTTCTTTGAGAT 23483 Query 79680 GTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGAC 79739 || || | ||||| || |||||||| ||||| || ||| |||||||| | || Sbjct 23484 CAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAG 23543 Query 79740 CAGGAAGCAGCTCGACATCTGTGG-GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCG 79798 ||||| ||||||||||| || || ||| | || || | |||||||| ||||| | | Sbjct 23544 TAGGAAACAGCTCGACATTTGAGGAATTGGT-GTGCCCGAATTGAAGAGAGTCGGGGAGG 23602 Query 79799 CGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGT 79858 | || ||||| |||| || ||| |||| ||||||||| | | ||| || | Sbjct 23603 CATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCAT 23662 Query 79859 CGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTC 79907 | |||||||| || | | || ||||| || | || |||||| |||| Sbjct 23663 CACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 23711 Score = 152 bits (168), Expect = 6e-32 Identities = 362/542 (67%), Gaps = 4/542 (1%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| | || ||| ||||||| ||||| || || | ||||| || ||||| Sbjct 23642 GAGACGTACCATCTAATGTCTCAGAAGTGGTTCACCCATGCCTCCCCGACTCTCTTCAAT 23583 Query 19226 GCCGGTACGAACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 | || || | ||| || || |||||||||||||||||| | | |||||||||||||| Sbjct 23582 TCGGGCAC-ACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGATGACAG 23524 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 |||||||| |||||||| || ||||| | || || ||||| ||| | ||||| Sbjct 23523 TATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGCTGGGGG 23464 Query 19345 TATCGGGATCCACTGCTC-GAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 | || | | || || ||| || | ||||| ||| || || || | Sbjct 23463 CGTTGGCCT-TAATGTTCATTGTATTCGTAGCAAGGGTACTTTTATCGCCGGAACCAATG 23405 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | | | || | || | || || |||||||| || | ||| | ||| || ||||| || Sbjct 23404 GTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCGCTAGGTATGTGG 23345 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 | ||||| ||| || || || | || || || || || || || |||||| | | Sbjct 23344 ATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAACCCTGGCACCCTG 23285 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 | ||| || | ||| | || |||||| ||| || | |||||||| || | | | Sbjct 23284 ATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTCGTGCTAGAG 23225 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 | ||||| ||| | |||||||| || || |||||| ||| |||| | | || || Sbjct 23224 ATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACGATGATGAGA 23165 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| | ||| || ||||||||||||||||| | ||| || || |||| || Sbjct 23164 AGTGGACTTTCATGGATCCTCACGAATGCCCTGGCCTGGCTGACTGCTGGGGAGAGGAGT 23105 Query 19704 TC 19705 || Sbjct 23104 TC 23103 >seq1079 Length=19334 Score = 163 bits (180), Expect = 3e-35 Identities = 396/589 (67%), Gaps = 8/589 (1%) Strand=Plus/Minus Query 79323 CAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTC 79382 |||||| ||||| ||||| || ||| | ||| | ||| || | | |||| ||| Sbjct 5750 CAGGCCAGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTG 5691 Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 |||||| || || || ||||| || ||| ||||| || | ||| |||||||| | Sbjct 5690 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 5631 Query 79443 GCCC-TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGAT 79501 || || ||| | |||||||| | || | || || || | |||||| || || |||| Sbjct 5630 TCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGAT 5572 Query 79502 AGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGT 79561 | || || || | ||| ||||| ||| ||||| | || |||| || ||| | | Sbjct 5571 ATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTAT 5512 Query 79562 TGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTG 79621 || | |||||||||||||| || | ||| | || | || || || ||| ||| | Sbjct 5511 TGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAG 5452 Query 79622 TACCGCTCGCC-CGAATGTTC-GAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGAT 79679 |||| || || ||||| || || | | || | |||||| | ||| ||||| Sbjct 5451 TACC-CTTGCTACGAATACAATGAACATTA-AGGCCAACGCCCCCAGCGTTCTTTGAGAT 5394 Query 79680 GTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGAC 79739 || || | ||||| || |||||||| ||||| || ||| |||||||| | || Sbjct 5393 CAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAG 5334 Query 79740 CAGGAAGCAGCTCGACATCTGTGG-GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCG 79798 ||||| ||||||||||| || || ||| | || || | |||||||| ||||| | | Sbjct 5333 TAGGAAACAGCTCGACATTTGAGGAATTGGT-GTGCCCGAATTGAAGAGAGTCGGGGAGG 5275 Query 79799 CGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGT 79858 | || ||||| |||| || ||| |||| ||||||||| | | ||| || | Sbjct 5274 CATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCAT 5215 Query 79859 CGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTC 79907 | |||||||| || | | || ||||| || | || |||||| |||| Sbjct 5214 CACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 5166 Score = 152 bits (168), Expect = 6e-32 Identities = 362/542 (67%), Gaps = 4/542 (1%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| | || ||| ||||||| ||||| || || | ||||| || ||||| Sbjct 5235 GAGACGTACCATCTAATGTCTCAGAAGTGGTTCACCCATGCCTCCCCGACTCTCTTCAAT 5294 Query 19226 GCCGGTACGAACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 | || || | ||| || || |||||||||||||||||| | | |||||||||||||| Sbjct 5295 TCGGGCAC-ACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGATGACAG 5353 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 |||||||| |||||||| || ||||| | || || ||||| ||| | ||||| Sbjct 5354 TATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGCTGGGGG 5413 Query 19345 TATCGGGATCCACTGCTC-GAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 | || | | || || ||| || | ||||| ||| || || || | Sbjct 5414 CGTTGGCCT-TAATGTTCATTGTATTCGTAGCAAGGGTACTTTTATCGCCGGAACCAATG 5472 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | | | || | || | || || |||||||| || | ||| | ||| || ||||| || Sbjct 5473 GTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCGCTAGGTATGTGG 5532 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 | ||||| ||| || || || | || || || || || || || |||||| | | Sbjct 5533 ATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAACCCTGGCACCCTG 5592 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 | ||| || | ||| | || |||||| ||| || | |||||||| || | | | Sbjct 5593 ATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTCGTGCTAGAG 5652 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 | ||||| ||| | |||||||| || || |||||| ||| |||| | | || || Sbjct 5653 ATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCACGATGATGAGA 5712 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| | ||| || ||||||||||||||||| | ||| || || |||| || Sbjct 5713 AGTGGACTTTCATGGATCCTCACGAATGCCCTGGCCTGGCTGACTGCTGGGGAGAGGAGT 5772 Query 19704 TC 19705 || Sbjct 5773 TC 5774 >seq2512 Length=2172 Score = 149 bits (164), Expect = 7e-31 Identities = 359/533 (67%), Gaps = 8/533 (2%) Strand=Plus/Plus Query 79379 TCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCT 79438 ||| |||||| || || || ||||| || ||| ||||| || | ||| ||||||| Sbjct 1 TCTGCATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCT 60 Query 79439 CGTCGCCC-TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCC 79497 | | || || ||| | |||||||| | || | || || || | |||||| || || Sbjct 61 CAGCTCCGGTGTTTCTG-CGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCT 119 Query 79498 AGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTG 79557 ||||| || || || | ||| ||||| ||| ||||| | || |||| || ||| Sbjct 120 AGATATATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTG 179 Query 79558 TTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATT 79617 | ||| | |||||||||||||| || | ||| | || | || || || ||| ||| Sbjct 180 CTATTGTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATA 239 Query 79618 CGTGTACCGCTCGCC-CGAATGTTC-GAGCAGTGGATTCCGATGCCCCCGGACCACTTGG 79675 ||||| || || ||||| || || | | || | |||||| | ||| | Sbjct 240 AAAGTACC-CTTGCTACGAATACAATGAACATTA-AGGCCAACGCCCCCAGCGTTCTTTG 297 Query 79676 AGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAG 79735 |||| || || | ||||| || |||||||| ||||| || ||| |||||||| | Sbjct 298 AGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTG 357 Query 79736 CGACCAGGAAGCAGCTCGACATCTGTGG-GTTGTTCGTACCGGCGTTGAAGAGGGTCGGC 79794 || ||||| ||||||||||| || || ||| | || || | |||||||| ||||| Sbjct 358 TGAGTAGGAAACAGCTCGACATTTGAGGAATTGGT-GTGCCCGAATTGAAGAGAGTCGGG 416 Query 79795 GTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGG 79854 | || || ||||| |||| || ||| |||| ||||||||| | | ||| Sbjct 417 GAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGA 476 Query 79855 TCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTC 79907 || || |||||||| || | | || ||||| || | || |||||| |||| Sbjct 477 TCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 Score = 129 bits (142), Expect = 6e-25 Identities = 309/462 (67%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| | || ||| ||||||| ||||| || || | ||||| || ||||| Sbjct 460 GAGACGTACCATCTAATGTCTCAGAAGTGGTTCACCCATGCCTCCCCGACTCTCTTCAAT 401 Query 19226 GCCGGTACGAACAAC-CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 | || || | ||| || || |||||||||||||||||| | | |||||||||||||| Sbjct 400 TCGGGCAC-ACCAATTCCTCAAATGTCGAGCTGTTTCCTACTCACAATGAAGGATGACAG 342 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 |||||||| |||||||| || ||||| | || || ||||| ||| | ||||| Sbjct 341 TATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAGAACGCTGGGGG 282 Query 19345 TATCGGGATCCACTGCTC-GAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 | || | | || || ||| || | ||||| ||| || || || | Sbjct 281 CGTTGGCCT-TAATGTTCATTGTATTCGTAGCAAGGGTACTTTTATCGCCGGAACCAATG 223 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | | | || | || | || || |||||||| || | ||| | ||| || ||||| || Sbjct 222 GTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCGCTAGGTATGTGG 163 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 | ||||| ||| || || || | || || || || || || || |||||| | | Sbjct 162 ATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAACCCTGGCACCCTG 103 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 | ||| || | ||| | || |||||| ||| || | |||||||| || | | | Sbjct 102 ATGTCTTGCAGTTCATGGAGCTGCGCAGAAACACCGGAGCTGAGGAGATTCGTGCTAGAG 43 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGA 19625 | ||||| ||| | |||||||| || || |||||| ||| Sbjct 42 ATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548499821551920