Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3534 127 2e-24 seq1079 127 2e-24 seq781 122 1e-22 seq2512 120 3e-22 >seq3534 Length=36356 Score = 127 bits (140), Expect = 2e-24 Identities = 391/591 (66%), Gaps = 14/591 (2%) Strand=Plus/Minus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACAC 53232 |||| || ||| | | || ||||| || ||||||||||||||||||| || || | Sbjct 23711 GAGAGACCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAA 23652 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || | |||||||||| | ||||| || |||| || || || ||| | || || Sbjct 23651 GC-TGCCTTTGAGACGTACCATCTAATGTCTCAGAAGTGGTTCACCCATGCCTCCCCGAC 23593 Query 53293 CCTGTTCAACGCTGGTACG--AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || ||||| | || || ||| ||||| ||||||||||| ||||| | | ||| Sbjct 23592 TCTCTTCAATTCGGGCACACCAATT--CCTCAAATGTCGAGCTGTTTCCTACTCACAATG 23535 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||||||| || || || |||||||| || ||||| | ||||| ||||| ||| Sbjct 23534 AAGGATGACAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAG 23475 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCA 53468 | || || | || | | || || | | | ||| || || || ||| Sbjct 23474 AACGCTGGGGGCGTTGGCCT-TAATGTTC-ATTGTATTCGTAGCAAGGGTACTTTTATCG 23417 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || || || | || |||| | || || |||||||| || | ||| | ||| | Sbjct 23416 CCGGAACCAATGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCG 23357 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | |||| || | |||||||| ||||| || | || || || || || || | Sbjct 23356 CTAGGTATGTGGATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAAC 23297 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCA-GGGTGACGAAGAG 53647 | |||||| | || | || |||| | |||||||| | ||| || || | || ||| Sbjct 23296 CCTGGCACCCTGATGTCTTGCAGTTCATGGAGCTGCG-CAGAAACACCGGAGCTGAGGAG 23238 Query 53648 ATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGT 53706 || || ||| | || || ||| ||||| |||||||| || || |||||||| | ||| Sbjct 23237 ATTCG-TGCTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGT 23179 Query 53707 GGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 | | || ||| ||||| | ||| || |||| ||||| ||||| Sbjct 23178 TCACGATGATGAGAAGTGGACTTTCATGGATCCTCACGAATGCCCTGGCCT 23128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 55743 GGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGT 55802 |||| |||||||||||||||||||| | | ||||| | ||| ||||||| | | | Sbjct 21927 GGACTGTGTGGGAGATTCCACAGAAAACGATTATTGATCTTGCTGCAGATCGTGCTCCTT 21868 Query 55803 ACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACT-GGCCAAGTTG 55861 ||| || ||| || || ||||| || ||| || | || ||| | ||| | Sbjct 21867 TCATAGATCAGAGTCAATCACTGAATCTCCACATAAAGGAGCC-CAACTATGGAAAGATC 21809 Query 55862 AGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGG 55921 | || ||||| || |||| ||||| ||||||||| ||||| || |||||||| || || Sbjct 21808 ACTTCCATGCATTTCTACGCGTGGAGGAAGGGACTGAAGACTGGAATGTACTACCTCCGA 21749 Query 55922 ACCCG 55926 ||||| Sbjct 21748 ACCCG 21744 >seq1079 Length=19334 Score = 127 bits (140), Expect = 2e-24 Identities = 391/591 (66%), Gaps = 14/591 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACAC 53232 |||| || ||| | | || ||||| || ||||||||||||||||||| || || | Sbjct 5166 GAGAGACCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAA 5225 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || | |||||||||| | ||||| || |||| || || || ||| | || || Sbjct 5226 GC-TGCCTTTGAGACGTACCATCTAATGTCTCAGAAGTGGTTCACCCATGCCTCCCCGAC 5284 Query 53293 CCTGTTCAACGCTGGTACG--AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || ||||| | || || ||| ||||| ||||||||||| ||||| | | ||| Sbjct 5285 TCTCTTCAATTCGGGCACACCAATT--CCTCAAATGTCGAGCTGTTTCCTACTCACAATG 5342 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||||||| || || || |||||||| || ||||| | ||||| ||||| ||| Sbjct 5343 AAGGATGACAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAG 5402 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCA 53468 | || || | || | | || || | | | ||| || || || ||| Sbjct 5403 AACGCTGGGGGCGTTGGCCT-TAATGTTC-ATTGTATTCGTAGCAAGGGTACTTTTATCG 5460 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || || || | || |||| | || || |||||||| || | ||| | ||| | Sbjct 5461 CCGGAACCAATGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCG 5520 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | |||| || | |||||||| ||||| || | || || || || || || | Sbjct 5521 CTAGGTATGTGGATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAAC 5580 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCA-GGGTGACGAAGAG 53647 | |||||| | || | || |||| | |||||||| | ||| || || | || ||| Sbjct 5581 CCTGGCACCCTGATGTCTTGCAGTTCATGGAGCTGCG-CAGAAACACCGGAGCTGAGGAG 5639 Query 53648 ATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGT 53706 || || ||| | || || ||| ||||| |||||||| || || |||||||| | ||| Sbjct 5640 ATTCG-TGCTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGT 5698 Query 53707 GGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 | | || ||| ||||| | ||| || |||| ||||| ||||| Sbjct 5699 TCACGATGATGAGAAGTGGACTTTCATGGATCCTCACGAATGCCCTGGCCT 5749 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 55743 GGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGT 55802 |||| |||||||||||||||||||| | | ||||| | ||| ||||||| | | | Sbjct 6950 GGACTGTGTGGGAGATTCCACAGAAAACGATTATTGATCTTGCTGCAGATCGTGCTCCTT 7009 Query 55803 ACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACT-GGCCAAGTTG 55861 ||| || ||| || || ||||| || ||| || | || ||| | ||| | Sbjct 7010 TCATAGATCAGAGTCAATCACTGAATCTCCACATAAAGGAGCC-CAACTATGGAAAGATC 7068 Query 55862 AGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGG 55921 | || ||||| || |||| ||||| ||||||||| ||||| || |||||||| || || Sbjct 7069 ACTTCCATGCATTTCTACGCGTGGAGGAAGGGACTGAAGACTGGAATGTACTACCTCCGA 7128 Query 55922 ACCCG 55926 ||||| Sbjct 7129 ACCCG 7133 >seq781 Length=13122981 Score = 122 bits (134), Expect = 1e-22 Identities = 298/446 (67%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 |||||||| |||||||| |||||||| | |||| ||| || | ||||||| || || Sbjct 8955397 CCGGTACCAATGCCCTCCGCACCGTTAATGAGAACCATAGGAATAATAGGGATATACCAC 8955338 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGA-ATTGTCAGCCGG 151994 || || || | || ||| |||||| | ||| || | ||| | |||| | | Sbjct 8955337 TCGGGTTCAATCTTCTGATTGTCATCATGAAGGTAATTGA----GGATAGCGTCATCGTG 8955282 Query 151995 ATC---GAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGC 152051 || ||| | || | ||| |||||||||| |||||||||||| ||||| || Sbjct 8955281 TTCATGGAACAATTTTCTACTCAGAGGACTCAAAGCCGTGAAGATGTAACGGGAAGAAGC 8955222 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 | ||| || ||||| |||| || || || ||||| || ||| || || ||||| Sbjct 8955221 GGAATCTTTACCACCGGCCAATCGGGTACCGAACTGACCGATGGGAAGCAGAAGATTGAG 8955162 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 || || | || || |||| |||||||| || ||||| || ||| ||| ||| || Sbjct 8955161 ATTATTAGAACCAACAAAATCCTGAGCCAGGTTAACAATAGTTCCCATCAGCGACGCCTC 8955102 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC-CCGC-CAACTGCGCCACCTTCATG 152229 ||| |||||||| | | | || ||| | | |||| ||| || |||||| || Sbjct 8955101 ACCATGGTGATAGGAGGACATTTC--TGATACAGCACCGCACAATTGATGCACCTTGATT 8955044 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 || || | | || || | ||||| | ||| ||||| | |||| ||||| ||| Sbjct 8955043 TCTTTCACCTGATTGCGTTTCAAACAGGTGAAAAGGACCTTTCTCTGGCCGGGTTTTAAA 8954984 Query 152290 CCGTCCACCACGTGAGGAATCGAACG 152315 || ||||||| ||||| ||||| Sbjct 8954983 CCATCCACCAAAGAGGGAATAGAACG 8954958 >seq2512 Length=2172 Score = 120 bits (132), Expect = 3e-22 Identities = 355/534 (66%), Gaps = 14/534 (3%) Strand=Plus/Minus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACAC 53232 |||| || ||| | | || ||||| || ||||||||||||||||||| || || | Sbjct 529 GAGAGACCCCAGCACATGTTTATGCGTGTGTCCTTGGGTATCCACGGTGATGATCTCGAA 470 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || | |||||||||| | ||||| || |||| || || || ||| | || || Sbjct 469 GC-TGCCTTTGAGACGTACCATCTAATGTCTCAGAAGTGGTTCACCCATGCCTCCCCGAC 411 Query 53293 CCTGTTCAACGCTGGTACG--AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || ||||| | || || ||| ||||| ||||||||||| ||||| | | ||| Sbjct 410 TCTCTTCAATTCGGGCACACCAATT--CCTCAAATGTCGAGCTGTTTCCTACTCACAATG 353 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||||||| || || || |||||||| || ||||| | ||||| ||||| ||| Sbjct 352 AAGGATGACAGTATTGAGGGTATCTACGATACACTCAAACAATGTGCTTTGATCTCAAAG 293 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCA 53468 | || || | || | | || || | | | ||| || || || ||| Sbjct 292 AACGCTGGGGGCGTTGGCCT-TAATGTTC-ATTGTATTCGTAGCAAGGGTACTTTTATCG 235 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || || || | || |||| | || || |||||||| || | ||| | ||| | Sbjct 234 CCGGAACCAATGGTGAATCCAATGGCTTGGTTCCCATGCTCCGAGTGTACAATAGCACCG 175 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 | |||| || | |||||||| ||||| || | || || || || || || | Sbjct 174 CTAGGTATGTGGATCAGGGTGGCAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAAC 115 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCA-GGGTGACGAAGAG 53647 | |||||| | || | || |||| | |||||||| | ||| || || | || ||| Sbjct 114 CCTGGCACCCTGATGTCTTGCAGTTCATGGAGCTGCG-CAGAAACACCGGAGCTGAGGAG 56 Query 53648 ATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCA 53700 || || ||| | || || ||| ||||| |||||||| || || |||||||| Sbjct 55 ATTCG-TGCTAGAGATCTCTTTTTGGCTCTCTGGATTCCTGATCTTTTCATGCA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547191081151400