Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12-
11] 3,643 sequences; 182,136,974 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1091 208 9e-49
seq778 183 3e-41
seq3456 176 5e-39
seq781 107 2e-18
seq3534 84.2 2e-11
seq2512 84.2 2e-11
seq1079 84.2 2e-11
>seq1091
Length=18644
Score = 208 bits (230), Expect = 9e-49
Identities = 183/228 (80%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || || || ||||| ||||| ||||| || ||| | |
Sbjct 1493 AATGCAGATCTTTGTTAAGACTCTCACAGGAAAGACCATTACACTTGAAGTCGAGCCCAG 1552
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||||| ||| |||||||||| ||||| |||||||| || ||||| ||||||||
Sbjct 1553 CGATACCATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1612
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||||| || |||||||| |||||||| || |||| |||||| || | ||||| ||
Sbjct 1613 ACAGCGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACTCTCTCTGACTACAA 1672
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||||||||| ||||| ||||| || | || ||||| |||||
Sbjct 1673 CATCCAAAAGGAATCTACTCTACATCTTGTGCTTCGCCTTCGTGGTGG 1720
Score = 206 bits (228), Expect = 3e-48
Identities = 183/229 (80%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| ||||| || ||||| || ||||||||||| || |||||| | |
Sbjct 1265 AATGCAGATTTTTGTGAAGACTCTCACCGGTAAAACTATTACTCTCGAAGTTGAGCCCAG 1324
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | ||| | |||||||| ||||| |||||||| || ||||| ||||||||
Sbjct 1325 CGATACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1384
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||||| || |||||||| |||||||| || |||| ||||||||| | ||||| ||
Sbjct 1385 ACAACGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTCTCTGACTACAA 1444
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||||||||| ||||| ||||| | || |||||||| || ||||||
Sbjct 1445 CATCCAAAAGGAGTCCACACTTCACTTGGTATTGCGTCTACGTGGTGGA 1493
>seq778
Length=21138827
Score = 183 bits (202), Expect = 3e-41
Identities = 179/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461
|| |||||| || ||||||||||| | || ||||| ||||| |||||||| |||||| |
Sbjct 14605946 TAAAATGCAGATTTTTGTCAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCC 14606005
Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521
||| ||||| |||| | ||||| ||||||||||| ||||| || ||||| |||||
Sbjct 14606006 TTCAGATTCCATTGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGTATTCCCCCAGA 14606065
Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581
|| || ||| | || |||||||| ||||| || || |||| ||||| || | |||||
Sbjct 14606066 TCAACAACGTTTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACTCTCTCGGACTA 14606125
Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| |||||||| || ||||| | || ||||||||||| |||||
Sbjct 14606126 CAACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGCGTCTTCGTGGTGG 14606176
>seq3456
Length=47684
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||| || || || || ||||| || ||||| || ||||||||| | ||
Sbjct 38983 ATGCAAATTTTTGTGAAAACCCTCACTGGCAAAACAATTACACTCGAGGTTGAGCCGAGT 38924
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| || ||||| | || |||||||| |||||||| || || ||||| ||
Sbjct 38923 GATACGATTGAGAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCAA 38864
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || || ||||||||||||||||| || || || | |||||| || | || || |||
Sbjct 38863 CAACGACTCATTTTTGCTGGTAAGCAGCTAGAAGAAGGTCGTACGCTTTCTGATTACAAT 38804
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || ||||| ||||| || | |||||||| || ||
Sbjct 38803 ATCCAAAAGGAGTCGACTCTACATCTTGTGCTTCGTCTTCGTGGCGG 38757
>seq781
Length=13122981
Score = 107 bits (118), Expect = 2e-18
Identities = 120/158 (76%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 32093 CCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTG 32152
|||||||||| || ||||||||||| ||| || ||||| ||||| |||||| | ||||
Sbjct 8955088 CCTATCACCATGGTGAGGCGTCGCTGATGGGAACTATTGTTAACCTGGCTCAGGATTTTG 8955147
Query 32153 TCGGTGCAAATAACCTGAA-CTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCC 32211
| ||| | ||||| || || ||| | ||||| || ||||| || ||||| | |||
Sbjct 8955148 TTGGTTCTAATAATCTCAATCTTCTGCTTCCCATC-GGTCAGTTCGGTACCCGATTGGCC 8955206
Query 32212 GGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249
||||| || ||| | || |||||||||||||||||
Sbjct 8955207 GGTGGTAAAGATTCCGCTTCTTCCCGTTACATCTTCAC 8955244
>seq3534
Length=36356
Score = 84.2 bits (92), Expect = 2e-11
Identities = 163/238 (68%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 81519 CTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTT 81578
|||||| ||| |||||| | || | || || || || ||||| || || || | ||
Sbjct 23475 CTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTT 23534
Query 81579 CATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGT 81638
||| || | ||||||||| ||||| ||||| || || ||| | |||||| || ||
Sbjct 23535 CATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGT 23594
Query 81639 TGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTG 81697
|||| || || |||| | | ||||| || | || || || | | || |
Sbjct 23595 CGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTC 23654
Query 81698 GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755
|| ||| |||||||| ||||| | | |||||||||||||||| |||||| ||||
Sbjct 23655 GAG-ATCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 23711
>seq2512
Length=2172
Score = 84.2 bits (92), Expect = 2e-11
Identities = 163/238 (68%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 81519 CTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTT 81578
|||||| ||| |||||| | || | || || || || ||||| || || || | ||
Sbjct 293 CTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTT 352
Query 81579 CATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGT 81638
||| || | ||||||||| ||||| ||||| || || ||| | |||||| || ||
Sbjct 353 CATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGT 412
Query 81639 TGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTG 81697
|||| || || |||| | | ||||| || | || || || | | || |
Sbjct 413 CGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTC 472
Query 81698 GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755
|| ||| |||||||| ||||| | | |||||||||||||||| |||||| ||||
Sbjct 473 GAG-ATCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529
>seq1079
Length=19334
Score = 84.2 bits (92), Expect = 2e-11
Identities = 163/238 (68%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 81519 CTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTT 81578
|||||| ||| |||||| | || | || || || || ||||| || || || | ||
Sbjct 5402 CTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTT 5343
Query 81579 CATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGT 81638
||| || | ||||||||| ||||| ||||| || || ||| | |||||| || ||
Sbjct 5342 CATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGT 5283
Query 81639 TGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTG 81697
|||| || || |||| | | ||||| || | || || || | | || |
Sbjct 5282 CGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTC 5223
Query 81698 GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755
|| ||| |||||||| ||||| | | |||||||||||||||| |||||| ||||
Sbjct 5222 GAG-ATCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 5166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570284429490160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |