Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1091 208 9e-49 seq778 183 3e-41 seq3456 176 5e-39 seq781 107 2e-18 seq3534 84.2 2e-11 seq2512 84.2 2e-11 seq1079 84.2 2e-11 >seq1091 Length=18644 Score = 208 bits (230), Expect = 9e-49 Identities = 183/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || || ||||| ||||| ||||| || ||| | | Sbjct 1493 AATGCAGATCTTTGTTAAGACTCTCACAGGAAAGACCATTACACTTGAAGTCGAGCCCAG 1552 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| ||| |||||||||| ||||| |||||||| || ||||| |||||||| Sbjct 1553 CGATACCATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1612 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || |||||||| |||||||| || |||| |||||| || | ||||| || Sbjct 1613 ACAGCGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACTCTCTCTGACTACAA 1672 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| ||||| ||||| || | || ||||| ||||| Sbjct 1673 CATCCAAAAGGAATCTACTCTACATCTTGTGCTTCGCCTTCGTGGTGG 1720 Score = 206 bits (228), Expect = 3e-48 Identities = 183/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || ||||| || ||||||||||| || |||||| | | Sbjct 1265 AATGCAGATTTTTGTGAAGACTCTCACCGGTAAAACTATTACTCTCGAAGTTGAGCCCAG 1324 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | |||||||| ||||| |||||||| || ||||| |||||||| Sbjct 1325 CGATACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1384 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || |||||||| |||||||| || |||| ||||||||| | ||||| || Sbjct 1385 ACAACGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTCTCTGACTACAA 1444 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| ||||| ||||| | || |||||||| || |||||| Sbjct 1445 CATCCAAAAGGAGTCCACACTTCACTTGGTATTGCGTCTACGTGGTGGA 1493 >seq778 Length=21138827 Score = 183 bits (202), Expect = 3e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| || ||||||||||| | || ||||| ||||| |||||||| |||||| | Sbjct 14605946 TAAAATGCAGATTTTTGTCAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAGCC 14606005 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 ||| ||||| |||| | ||||| ||||||||||| ||||| || ||||| ||||| Sbjct 14606006 TTCAGATTCCATTGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGTATTCCCCCAGA 14606065 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || ||| | || |||||||| ||||| || || |||| ||||| || | ||||| Sbjct 14606066 TCAACAACGTTTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACTCTCTCGGACTA 14606125 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| |||||||| || ||||| | || ||||||||||| ||||| Sbjct 14606126 CAACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGCGTCTTCGTGGTGG 14606176 >seq3456 Length=47684 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || || || ||||| || ||||| || ||||||||| | || Sbjct 38983 ATGCAAATTTTTGTGAAAACCCTCACTGGCAAAACAATTACACTCGAGGTTGAGCCGAGT 38924 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || ||||| | || |||||||| |||||||| || || ||||| || Sbjct 38923 GATACGATTGAGAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCAA 38864 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || ||||||||||||||||| || || || | |||||| || | || || ||| Sbjct 38863 CAACGACTCATTTTTGCTGGTAAGCAGCTAGAAGAAGGTCGTACGCTTTCTGATTACAAT 38804 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| ||||| || | |||||||| || || Sbjct 38803 ATCCAAAAGGAGTCGACTCTACATCTTGTGCTTCGTCTTCGTGGCGG 38757 >seq781 Length=13122981 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 32093 CCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTG 32152 |||||||||| || ||||||||||| ||| || ||||| ||||| |||||| | |||| Sbjct 8955088 CCTATCACCATGGTGAGGCGTCGCTGATGGGAACTATTGTTAACCTGGCTCAGGATTTTG 8955147 Query 32153 TCGGTGCAAATAACCTGAA-CTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCC 32211 | ||| | ||||| || || ||| | ||||| || ||||| || ||||| | ||| Sbjct 8955148 TTGGTTCTAATAATCTCAATCTTCTGCTTCCCATC-GGTCAGTTCGGTACCCGATTGGCC 8955206 Query 32212 GGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||| || ||| | || ||||||||||||||||| Sbjct 8955207 GGTGGTAAAGATTCCGCTTCTTCCCGTTACATCTTCAC 8955244 >seq3534 Length=36356 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 81519 CTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTT 81578 |||||| ||| |||||| | || | || || || || ||||| || || || | || Sbjct 23475 CTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTT 23534 Query 81579 CATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGT 81638 ||| || | ||||||||| ||||| ||||| || || ||| | |||||| || || Sbjct 23535 CATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGT 23594 Query 81639 TGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTG 81697 |||| || || |||| | | ||||| || | || || || | | || | Sbjct 23595 CGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTC 23654 Query 81698 GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755 || ||| |||||||| ||||| | | |||||||||||||||| |||||| |||| Sbjct 23655 GAG-ATCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 23711 >seq2512 Length=2172 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 81519 CTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTT 81578 |||||| ||| |||||| | || | || || || || ||||| || || || | || Sbjct 293 CTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTT 352 Query 81579 CATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGT 81638 ||| || | ||||||||| ||||| ||||| || || ||| | |||||| || || Sbjct 353 CATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGT 412 Query 81639 TGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTG 81697 |||| || || |||| | | ||||| || | || || || | | || | Sbjct 413 CGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTC 472 Query 81698 GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755 || ||| |||||||| ||||| | | |||||||||||||||| |||||| |||| Sbjct 473 GAG-ATCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 >seq1079 Length=19334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 81519 CTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTT 81578 |||||| ||| |||||| | || | || || || || ||||| || || || | || Sbjct 5402 CTTTGAGATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTT 5343 Query 81579 CATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGT 81638 ||| || | ||||||||| ||||| ||||| || || ||| | |||||| || || Sbjct 5342 CATTGTGAGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGT 5283 Query 81639 TGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTG 81697 |||| || || |||| | | ||||| || | || || || | | || | Sbjct 5282 CGGGGAGGCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTC 5223 Query 81698 GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTC 81755 || ||| |||||||| ||||| | | |||||||||||||||| |||||| |||| Sbjct 5222 GAG-ATCATCACCGTGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 5166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570284429490160