Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1091 118 7e-22 seq3456 96.9 2e-15 seq778 95.1 8e-15 >seq1091 Length=18644 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || ||| ||||||||| ||||| || || || || || || Sbjct 1483 AGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGA 1424 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || | ||| |||||||| || || | || ||| Sbjct 1423 CCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCC 1364 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| ||||| |||| || || || | ||| ||||| | || Sbjct 1363 TTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTA 1304 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||||||||| | || ||||||||||||||||| Sbjct 1303 ATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||| | ||| ||||| |||||||| ||||| || || || Sbjct 1720 CCACCACGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 1661 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||||||||| || || ||||| || | |||||||||||| || || Sbjct 1660 AGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 1601 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| || | || || | ||| || || | ||| || Sbjct 1600 ATGCCTTCCTTGTCT-TGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGAC 1542 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || | || || ||||| |||||||| Sbjct 1541 TTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCAT 1494 >seq3456 Length=47684 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||| | ||| ||||| ||||||||| || || ||||| ||| Sbjct 38757 CCGCCACGAAGACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAA 38816 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || ||||| ||||| || | || ||||| || || || Sbjct 38817 AGCGTACGACCTTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGG 38876 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCCA 34657 | |||||||| || ||||| | || ||| | ||| || || ||| ||| | Sbjct 38877 ATGCCCTCCTTATCCTGAATCTTC-GACTTCACGTTCTCAATCGTATCACTCGG-CTCAA 38934 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || ||||| || || | |||||||||||||| ||||| Sbjct 38935 CCTCGAGTGTAATTGTTTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 >seq778 Length=21138827 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||| || || || ||||| || ||||| || || || Sbjct 14606176 CCACCACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAG 14606117 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || || ||||| || ||||| ||||| || || || Sbjct 14606116 AGAGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGA 14606057 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || ||| ||| | |||| | ||| | ||| ||| || Sbjct 14606056 ATACCTTCCTTATC-CTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAAC 14605998 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| | || || ||||| || ||||| || || |||||||||||||| || Sbjct 14605997 TTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCATTTT 14605947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314715626300819