Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1091 172 1e-37 seq778 141 2e-28 seq3456 134 3e-26 >seq1091 Length=18644 Score = 172 bits (190), Expect = 1e-37 Identities = 161/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| |||||||| ||||||||||| || || | ||||| | |||||||| || || Sbjct 1469 GTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCTTCAAGTTG 1410 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| || |||||||| ||||||||||| || |||| ||||||||||| || ||||| Sbjct 1409 CTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 1350 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || |||||||| || | ||||| |||||||| || || || || || Sbjct 1349 AGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATAGTTTTACCGGT 1290 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||||||||| ||||| | ||||||| Sbjct 1289 GAGAGTCTTCACAAAAATCTGCATT 1265 Score = 159 bits (176), Expect = 8e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || ||||| || || ||||||||||| || || | || || Sbjct 1715 ACGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGT 1656 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || |||||||| || |||||||| || |||||||| || |||| || Sbjct 1655 ACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCC 1596 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| ||||| || || ||||| || | || || || || Sbjct 1595 TTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAG 1536 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || |||||||| ||||||||||| ||||| | ||||||| Sbjct 1535 TGTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCATT 1493 >seq778 Length=21138827 Score = 141 bits (156), Expect = 2e-28 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | |||||| || || || || |||||||| || |||| || || Sbjct 14606171 ACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGT 14606112 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| ||||||||||| || ||||| | |||||||| || || |||| || Sbjct 14606111 ACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATACC 14606052 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||| || || || || ||||| |||| || || ||||| || || Sbjct 14606051 TTCCTTATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAACTTCAAG 14605992 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 |||||| || || || || | |||||| ||||| | |||||||||| Sbjct 14605991 AGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCATTTTA 14605946 >seq3456 Length=47684 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || ||||| || ||||| ||||| |||||||| || ||||| | ||| || Sbjct 38762 ACGAAGACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGT 38821 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| |||||||| || || || || || |||||||| || || || | || Sbjct 38822 ACGACCTTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 38881 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| |||||||| || || || ||| ||||||||||| Sbjct 38882 CTCCTTATCCTGAATCTTCGACTTCACGTTCTCAATCGTATCACTCGGCTCAACCTCGAG 38941 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || ||||| || || ||||| | ||||| Sbjct 38942 TGTAATTGTTTTGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159097895493695