Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1091 118 7e-22 seq778 113 3e-20 seq3456 84.2 1e-11 >seq1091 Length=18644 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || ||||| || ||||| || |||||||||||||| ||| Sbjct 1265 AATGCAGATTTTTGTGAAGACTCTCACCGGTAAAACTATTACTCTCGAAGTTGAGCCCAG 1324 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || | |||| || ||| ||||| ||||| | || ||||| || Sbjct 1325 CGATACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 1384 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| ||||| ||||| | || || | || ||||| Sbjct 1385 ACAACGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTCTCTGACTACAA 1444 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| ||||||||| | || || || || Sbjct 1445 CATCCAAAAGGAGTCCACACTTCACTTGGTATT 1477 >seq778 Length=21138827 Score = 113 bits (124), Expect = 3e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 |||||||||||||||| || || || | || || ||||| |||||||| |||||||| Sbjct 14605945 TTAAAATGCAGATTTTTGTCAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAGC 14606004 Query 23666 CCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAG 23725 | | || | |||||| |||| |||||| || || |||||| | || |||| Sbjct 14606005 CTTCAGATTCCATTGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGTATTCCCCCAG 14606064 Query 23726 ATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785 ||||||| ||||| || ||||| ||||| || || ||||| | || ||| | || | Sbjct 14606065 ATCAACAACGTTTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGTACTCTCTCGGACT 14606124 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || || || || || Sbjct 14606125 ACAACATCCAGAAGGAATCTAC 14606146 >seq3456 Length=47684 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||||||||| || ||||| || || ||||| ||||| | | Sbjct 38983 ATGCAAATTTTTGTGAAAACCCTCACTGGCAAAACAATTACACTCGAGGTTGAGCCGAGT 38924 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || ||| || || || || | || ||||||||| Sbjct 38923 GATACGATTGAGAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCAA 38864 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| || || || || ||||| | || || | |||||||| Sbjct 38863 CAACGACTCATTTTTGCTGGTAAGCAGCTAGAAGAAGGTCGTACGCTTTCTGATTACAAT 38804 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || ||||| ||||| || ||||| Sbjct 38803 ATCCAAAAGGAGTCGACTCTACAT 38780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337994592690644