Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1091 136 9e-27 seq778 132 1e-25 seq3456 107 5e-18 >seq1091 Length=18644 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || ||||| ||||| ||||||| ||||| || | | ||| Sbjct 1715 ACGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGT 1656 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| ||||| |||||||| || |||||||| || ||||| || Sbjct 1655 ACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCC 1596 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||||||| || ||||| || || || || || | Sbjct 1595 TTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAG 1536 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | ||| || | || | |||||| Sbjct 1535 TGTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCATT 1493 Score = 118 bits (130), Expect = 3e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| || ||||| || ||||||| ||||| || | | || Sbjct 1487 ACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGT 1428 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| ||||| |||||||| ||||||||||| || ||||| || Sbjct 1427 ACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCC 1368 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| ||| |||||||| || || || || || | Sbjct 1367 TTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAG 1308 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || | ||| || | || | |||||| Sbjct 1307 AGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCATT 1265 >seq778 Length=21138827 Score = 132 bits (146), Expect = 1e-25 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || ||||| || |||| ||||| || | | ||| Sbjct 14606171 ACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGT 14606112 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||||||||| ||||| ||||| | |||||||| || || |||||||| Sbjct 14606111 ACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATACC 14606052 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || || || || ||| ||| ||| |||| ||||| | || || || | Sbjct 14606051 TTCCTTATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAACTTCAAG 14605992 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 ||||| || ||||| || ||||| || | || | ||||||||| Sbjct 14605991 AGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCATTTTA 14605946 >seq3456 Length=47684 Score = 107 bits (118), Expect = 5e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| || ||||| || || ||||||| ||||||||| | | || Sbjct 38762 ACGAAGACGAAGCACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGT 38821 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || |||||||||||||| ||||| || || ||||||||||| || || || || || Sbjct 38822 ACGACCTTCTTCTAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCC 38881 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||| || || ||||| |||||| Sbjct 38882 CTCCTTATCCTGAATCTTCGACTTCAC 38908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192475537488242