Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq779 163 2e-35 >seq779 Length=16055361 Score = 163 bits (180), Expect = 2e-35 Identities = 395/594 (66%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || ||||| |||||| ||||| ||| || || | |||||||| || ||| || || Sbjct 8446763 AAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCATTACTGAAAGTG 8446704 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | || ||||||||||| | ||| || ||||| || || | ||| ||||| || || ||| Sbjct 8446703 AGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAATGAACCCGAGAAG 8446644 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 |||| || ||||| || |||||||| || | || | | |||| | |||||| Sbjct 8446643 AATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATACGACGCGTCTTTGTTC 8446584 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 ||||| | | ||||| | || || ||||| || ||||| | || | || || Sbjct 8446583 CCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGCAAAGTCTCAATCGCA 8446524 Query 4785 TTAAA---TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || || || | || || || || |||| | |||||| || || || || Sbjct 8446523 TTGAAGAGGAAGTCACGCTTGGCA---GGCTCTTTCACATAAGTATCAATGAGGAGTGAG 8446467 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 ||||| || || || ||||| || | ||||| || | || || || || | |||||| Sbjct 8446466 TACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAACAACGAGCTTCA 8446407 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG-TTTTCGTTTACTATACCGTCACT 4960 | | |||||| || | || || || | | || || ||||| || ||||||||||| Sbjct 8446406 GGGATTTGAACCTCTTGGCAGAA-GTTCATGCAGAGATTCTCGTTCACGATACCGTCACT 8446348 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT 5020 ||| || || || |||| ||| || || ||||| | | || | || ||| | Sbjct 8446347 GGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGTCGTTCAGTCCCTC 8446288 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||||| | | |||||| || || ||||| || || || ||||| || || || | || Sbjct 8446287 CCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACAGC 8446228 Query 5081 TTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 || ||||| | ||| ||||| | || ||||| || | || ||||| || Sbjct 8446227 CTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATTACAAACCT 8446174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427030639398119