Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3534 250 3e-61 seq1079 250 3e-61 seq2512 212 9e-50 seq779 203 5e-47 >seq3534 Length=36356 Score = 250 bits (276), Expect = 3e-61 Identities = 446/645 (69%), Gaps = 12/645 (2%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| ||||||| | ||||| ||| ||| || || |||||||| ||| ||| || Sbjct 23073 CTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCC 23132 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||||||||| | || ||| || | ||| | |||| || | ||| | | ||| || Sbjct 23133 AGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAA 23192 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 |||||||| ||||| ||||| | ||| ||||||| | | | || ||| ||| || Sbjct 23193 AAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGT 23252 Query 78077 ATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 || | || || | |||| || | ||||| ||||| |||||||||||||| || Sbjct 23253 GTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGC 23312 Query 78137 CATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAAC 78196 | | | || || || ||||| || |||||||| | ||| || |||||| |||| || || Sbjct 23313 AAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACAC 23372 Query 78197 TCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACT 78256 || | ||| |||| | || || ||| ||||| ||||| | ||| || | || || Sbjct 23373 TCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACC-CT 23431 Query 78257 TGCG-CGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATTAGA 78311 ||| |||||| |||| | || || | || || || |||| || || | | Sbjct 23432 TGCTACGAATAC----AATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAA 23487 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || |||| | |||||||||||||||||| |||||||||||| |||| | || || Sbjct 23488 GCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGG 23547 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 |||||||| ||||||||| || || || | ||| || | ||||| || ||||| Sbjct 23548 AAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGG 23607 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTG 78490 || ||||| || | ||| | ||||| ||| || |||| || | ||| | || || | Sbjct 23608 GTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG 23667 Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || || || | | |||||||| ||||| ||||| ||||| || Sbjct 23668 -TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 23711 >seq1079 Length=19334 Score = 250 bits (276), Expect = 3e-61 Identities = 446/645 (69%), Gaps = 12/645 (2%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||| ||||||| | ||||| ||| ||| || || |||||||| ||| ||| || Sbjct 5804 CTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCC 5745 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 ||||||||| | || ||| || | ||| | |||| || | ||| | | ||| || Sbjct 5744 AGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAA 5685 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 |||||||| ||||| ||||| | ||| ||||||| | | | || ||| ||| || Sbjct 5684 AAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGT 5625 Query 78077 ATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 || | || || | |||| || | ||||| ||||| |||||||||||||| || Sbjct 5624 GTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGC 5565 Query 78137 CATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAAC 78196 | | | || || || ||||| || |||||||| | ||| || |||||| |||| || || Sbjct 5564 AAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACAC 5505 Query 78197 TCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACT 78256 || | ||| |||| | || || ||| ||||| ||||| | ||| || | || || Sbjct 5504 TCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACC-CT 5446 Query 78257 TGCG-CGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATTAGA 78311 ||| |||||| |||| | || || | || || || |||| || || | | Sbjct 5445 TGCTACGAATAC----AATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAA 5390 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || |||| | |||||||||||||||||| |||||||||||| |||| | || || Sbjct 5389 GCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGG 5330 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 |||||||| ||||||||| || || || | ||| || | ||||| || ||||| Sbjct 5329 AAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGG 5270 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTG 78490 || ||||| || | ||| | ||||| ||| || |||| || | ||| | || || | Sbjct 5269 GTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG 5210 Query 78491 ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || || || | | |||||||| ||||| ||||| ||||| || Sbjct 5209 -TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 5166 >seq2512 Length=2172 Score = 212 bits (234), Expect = 9e-50 Identities = 369/531 (69%), Gaps = 12/531 (2%) Strand=Plus/Plus Query 78011 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATT 78070 ||| || |||||||| ||||| ||||| | ||| ||||||| | | | || ||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 ||| || || | || || | |||| || | ||||| ||||| ||||||||||| Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 78131 TATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATT 78190 ||| || | | | || || || ||||| || |||||||| | ||| || |||||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 78191 ATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACT 78250 || |||| | ||| |||| | || || ||| ||||| ||||| | ||| || | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 78251 TCCACTTGCG-CGAATATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGAT 78305 || ||||| |||||| |||| | || || | || || || |||| || Sbjct 245 ACC-CTTGCTACGAATAC----AATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAG 299 Query 78306 ATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTA 78365 || | ||| || |||| | |||||||||||||||||| |||||||||||| |||| | Sbjct 300 ATCAAAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTG 359 Query 78366 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGAT 78425 || || |||||||| ||||||||| || || || | ||| || | ||||| || Sbjct 360 AGTAGGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAG 419 Query 78426 GCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC- 78484 ||||| || ||||| || | ||| | ||||| ||| || |||| || | ||| | || Sbjct 420 GCATGGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCA 479 Query 78485 CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || | || || || | | |||||||| ||||| ||||| ||||| || Sbjct 480 TCACCG-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTC 529 >seq779 Length=16055361 Score = 203 bits (224), Expect = 5e-47 Identities = 440/650 (68%), Gaps = 14/650 (2%) Strand=Plus/Minus Query 48126 TGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCG 48185 || || || || || || || |||||| ||| ||||| ||||| | ||||| || || Sbjct 8446775 TGCTTGAAGATCAAGCACGCGAAATCAGTATGCAGACCCTCATCGCGGCTAATCAACTCA 8446716 Query 48186 TTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA 48245 ||| || |||||||| ||||||| ||||| || || ||||| || |||| ||||| Sbjct 8446715 TTACTGAAAGTGAGACCAGGCATTAAACCACGCTTCTTCAGCCAGAAGATTGAGGCGAAT 8446656 Query 48246 GATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG 48305 || || || ||||||| || ||||| || ||||| || || | ||| | || Sbjct 8446655 GAACCCGAGAAGAATACACCCTCTACAGCTGCAAACGCCACAACACGCTCCGCATACGAC 8446596 Query 48306 GCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATT 48362 || || |||| ||||||| | |||||||| ||||||||||| ||||| |||| Sbjct 8446595 GCGTCTTTGTTCCCGATCCACCTCAGGGCCCAATCCGCCTTCTTCTTCACACACGGCAAA 8446536 Query 48363 GTTTCTATAGCATTAAAGAGAAAGt---ttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || ||||| ||||| |||| || || || ||||| || |||||||| Sbjct 8446535 GTCTCAATCGCATTGAAGAGGAAGTCACGCTTGGCA-GGC--TCTTTCACATAAGTATCA 8446479 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | || ||||| || ||||| ||||| |||| || || || | || || ||| Sbjct 8446478 ATGAGGAGTGAGTACATCTCCGAGTGGATATTCTCAACGGCAATTTGCATCCCATAGAAA 8446419 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA-GC-CAAATTCTCATTTA 48537 || | ||||| | ||| || ||||| || || ||||| || | |||||| || | Sbjct 8446418 CAACGAGCTTCAGGGATTTGAACCTCTTGGCAGAA--GTTCATGCAGAGATTCTCGTTCA 8446361 Query 48538 CTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGG 48597 | || || ||||| ||||| || || || | || || ||||||| || | Sbjct 8446360 CGATACCGTCACTGGCAGCGAAGAAAGCCAGAACGTGGGAGATAAAATGACGCTCCCCGT 8446301 Query 48598 AAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 48657 ||||| | ||||||| ||| |||||| | | || || || || | ||||| | Sbjct 8446300 CGTTCAGTCCCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGA 8446241 Query 48658 ATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAA 48717 | || ||| | || || || || | | ||| ||||| |||||| || || | || | Sbjct 8446240 AGGAAGCCACAGCCTTCTTGTAGAACTCCCAGATATCGTGGTATTGAATGGGCATGATTA 8446181 Query 48718 CAAATCTATTTGGATTTTTTGCAAGGATAGGTTCCAT-GACTAAATAAGA 48766 |||| ||| ||||| ||||||| ||||| || | |||| || || Sbjct 8446180 CAAACCTACCGGGATTGGGCTCAAGGATGGGTTCGATAGCCTAATTAGGA 8446131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694637166519520