Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3534 269 4e-67 seq1079 269 4e-67 seq2512 226 4e-54 >seq3534 Length=36356 Score = 269 bits (298), Expect = 4e-67 Identities = 453/650 (70%), Gaps = 4/650 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| ||||||| | ||||| | | ||| || || |||||||| ||| ||| || Sbjct 23073 CTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCC 23132 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||||| | ||| ||| || | ||||| |||| || | ||||| | ||| || Sbjct 23133 AGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAA 23192 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||||| ||||| ||||| | ||| ||||||| | | | || ||| ||| || Sbjct 23193 AAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGT 23252 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || | || || | ||||| || | ||||| ||||| |||||||||||||| || Sbjct 23253 GTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGC 23312 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | | |||| || || ||||| || |||||||| | ||| || || ||| |||| || || Sbjct 23313 AAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACAC 23372 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 || | ||| |||| | ||| || ||| |||||| ||||| | ||| || | || | Sbjct 23373 TCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACC-CT 23431 Query 76852 TGC-ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 ||| ||||||| | || | ||||| | || || || | || ||||| | ||||| Sbjct 23432 TGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCAC 23491 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | |||| | ||| || ||||| ||||| ||||| |||||| |||| | || || |||| Sbjct 23492 ATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAAC 23551 Query 76971 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGA 77030 |||| ||||||||| || || || | ||| || | || || || ||||| |||| Sbjct 23552 AGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGA 23611 Query 77031 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGA 77089 |||| || | ||| | ||||| ||| || |||| | ||||| | ||| || | || Sbjct 23612 ACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TGG 23670 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTT 77139 || || | | |||||||| ||||| ||||| |||| || |||||| Sbjct 23671 ATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCCCAAGTCTT 23720 >seq1079 Length=19334 Score = 269 bits (298), Expect = 4e-67 Identities = 453/650 (70%), Gaps = 4/650 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| ||||||| | ||||| | | ||| || || |||||||| ||| ||| || Sbjct 5804 CTCTTTTTCATACTTGGTATAGAGCGCTTCGAACTCCTCTCCCCAGCAGTCAGCCAGGCC 5745 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||||| | ||| ||| || | ||||| |||| || | ||||| | ||| || Sbjct 5744 AGGGCATTCGTGAGGATCCATGAAAGTCCACTTCTCATCATCGTGAACCCTCTGCATGAA 5685 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||||| ||||| ||||| | ||| ||||||| | | | || ||| ||| || Sbjct 5684 AAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGCTCCGGT 5625 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || | || || | ||||| || | ||||| ||||| |||||||||||||| || Sbjct 5624 GTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATATATAGC 5565 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | | |||| || || ||||| || |||||||| | ||| || || ||| |||| || || Sbjct 5564 AAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATTGTACAC 5505 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 || | ||| |||| | ||| || ||| |||||| ||||| | ||| || | || | Sbjct 5504 TCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGTACC-CT 5446 Query 76852 TGC-ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 ||| ||||||| | || | ||||| | || || || | || ||||| | ||||| Sbjct 5445 TGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCAAAGCAC 5386 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | |||| | ||| || ||||| ||||| ||||| |||||| |||| | || || |||| Sbjct 5385 ATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTAGGAAAC 5326 Query 76971 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGA 77030 |||| ||||||||| || || || | ||| || | || || || ||||| |||| Sbjct 5325 AGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCATGGGTGA 5266 Query 77031 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGA 77089 |||| || | ||| | ||||| ||| || |||| | ||||| | ||| || | || Sbjct 5265 ACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCACCG-TGG 5207 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTT 77139 || || | | |||||||| ||||| ||||| |||| || |||||| Sbjct 5206 ATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCCCAAGTCTT 5157 >seq2512 Length=2172 Score = 226 bits (250), Expect = 4e-54 Identities = 375/536 (70%), Gaps = 4/536 (1%) Strand=Plus/Plus Query 76606 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 ||| || |||||||| ||||| ||||| | ||| ||||||| | | | || ||| Sbjct 5 CATGAAAAGATCAGGAATCCAGAGAGCCAAAAAGAGATCTCTAGCACGAATCTCCTCAGC 64 Query 76666 TCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATA 76725 ||| || || | || || | ||||| || | ||||| ||||| ||||||||||| Sbjct 65 TCCGGTGTTTCTGCGCAGCTCCATGAACTGCAAGACATCAGGGTGCCAGGGTTCTAGATA 124 Query 76726 TATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATT 76785 ||| || | | |||| || || ||||| || |||||||| | ||| || || ||| |||| Sbjct 125 TATAGCAAAAGCACCGGGACGCTTATTGCCACCCTGATCCACATACCTAGCGGTGCTATT 184 Query 76786 ATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACT 76845 || |||| | ||| |||| | ||| || ||| |||||| ||||| | ||| || | Sbjct 185 GTACACTCGGAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCCGGCGATAAAAGT 244 Query 76846 TCCACATGC-ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTA 76904 || | ||| ||||||| | || | ||||| | || || || | || ||||| | Sbjct 245 ACC-CTTGCTACGAATACAATGAACATTAAGGCCAACGCCCCCAGCGTTCTTTGAGATCA 303 Query 76905 GAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAA 76964 |||||| |||| | ||| || ||||| ||||| ||||| |||||| |||| | || | Sbjct 304 AAGCACATTGTTTGAGTGTATCGTAGATACCCTCAATACTGTCATCCTTCATTGTGAGTA 363 Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 | |||||||| ||||||||| || || || | ||| || | || || || |||| Sbjct 364 GGAAACAGCTCGACATTTGAGGAATTGGTGTGCCCGAATTGAAGAGAGTCGGGGAGGCAT 423 Query 77025 GAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC-CCAT 77083 | |||||||| || | ||| | ||||| ||| || |||| | ||||| | ||| || Sbjct 424 GGGTGAACCACTTCTGAGACATTAGATGGTACGTCTCAAAGGCAGCTTCGAGATCATCAC 483 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTT 77139 | || || || | | |||||||| ||||| ||||| |||| || |||||| Sbjct 484 CG-TGGATACCCAAGGACACACGCATAAACATGTGCTGGGGTCTCTCCCAAGTCTT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712901934749760