Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1091 132 1e-25 seq778 118 2e-21 >seq1091 Length=18644 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| |||||||| || |||||||||||||| || | | ||| | |||||| Sbjct 1705 AGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCT 1646 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | ||| ||||| | | || |||||||| ||| Sbjct 1645 TCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 1586 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| |||| | | | || ||| |||||||| ||||| || Sbjct 1585 TGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTC 1526 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||||||||| || |||| ||||||| Sbjct 1525 TTTCCTGTGAGAGTCTTAACAAAGATCTGCATT 1493 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| |||||||||||||| || | | || | |||||||| | Sbjct 1472 CAAG-TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCATCTTCAA 1414 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || |||||||| | || ||||| | | || |||||||| ||||||| Sbjct 1413 GTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAA 1354 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | | || ||| ||||| |||||||||||||| | Sbjct 1353 TCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACTTCGAGAGTAATAGTTTTAC 1294 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | |||||||||||||| || | ||||||| Sbjct 1293 CGGTGAGAGTCTTCACAAAAATCTGCATT 1265 >seq778 Length=21138827 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || || ||||||||||| || | | ||| | |||||||||| Sbjct 14606156 CAAG-TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCATCTTCTA 14606098 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| | | || || || | | || |||||||| || |||| Sbjct 14606097 GCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCCTGAA 14606038 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| | || | | |||||| ||| ||||||||||| |||||||||| Sbjct 14606037 TTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAACTTCAAGAGTGATAGTTTTGC 14605978 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 | || | |||||| || || | |||||||||| Sbjct 14605977 CAGTTAAAGTCTTGACAAAAATCTGCATTTTA 14605946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153766944332453