Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1091 172 1e-37 seq778 159 7e-34 >seq1091 Length=18644 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| |||||||| || ||||||| || ||| ||||||||||||||||||| Sbjct 1722 AACCACCACGAAGGCGAAGCACAAGATGTAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 1663 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || || || ||||| || ||||| || || |||||||| | ||| |||||||| | Sbjct 1662 AGAGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGG 1603 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || ||||||||||| ||||| || || || | || || || || | |||| Sbjct 1602 GAATGCCTTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATGGTATCGCTGGGCTCGA 1543 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||| || || || ||||| || || | ||||||||| || ||||||||| Sbjct 1542 CTTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTAACAAAGATCTGCATT 1493 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | ||||| || | ||| || ||||||||||||||||||| Sbjct 1492 CCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAG 1433 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || ||||| || || |||||||| | |||||||||||| ||| Sbjct 1432 AGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGGGGGA 1373 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| ||||| || ||||| | ||||| || || | || ||| Sbjct 1372 ATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTCAACT 1313 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 |||||||| || || ||||| || | |||||| || || ||||||||| || Sbjct 1312 TCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCATTGTC 1262 >seq778 Length=21138827 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | || ||| || |||||||||||||| | Sbjct 14606177 ACCACCACGAAGACGCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGA 14606118 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| ||||| || || || |||||||||||||||||||| || || Sbjct 14606117 GAGAGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 14606058 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| || || || || || ||||| | || || | || |||| || || Sbjct 14606057 AATACCTTCCTTATCCTGAATTTTGGCCTTTACATTTTCAATGGAATCTGAAGGCTCAAC 14605998 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| |||||||| || || || || |||||||| || || ||||||||||| Sbjct 14605997 TTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTGACAAAAATCTGCATTTT 14605947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046690342466522