Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1091 105 5e-18 seq778 93.3 3e-14 seq3456 89.7 4e-13 >seq1091 Length=18644 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | ||| |||| |||||| ||| |||||||||||||||||| || Sbjct 1496 CATTCCACCACGTAGACGCAATACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTC 1437 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || || || ||||| || |||||||| | ||| || || |||| Sbjct 1436 AGAGAGGGTACGACCATCTTCAAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGGTCTGG 1377 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || ||||| ||| | | | ||||| ||| || || Sbjct 1376 GGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTCTCGATGGTATCGCTGGGCTC 1317 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| || || || ||||| |||||||| || || ||||| Sbjct 1316 AACTTCGAGAGTAATAGTTTTACCGGTGAGAGTCTTCACAAAAATCTGCAT 1266 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| || | ||| || | || || || ||||| || |||||| Sbjct 1684 TCCTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCAAGTTGCTTGCCAGCAAAG 1625 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | |||||| || |||| || | |||||||| || ||||| ||||| | Sbjct 1624 ATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTCACATTC 1565 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | ||||| ||| || || || || | ||||| |||||||| ||||| ||||| || Sbjct 1564 TCAATGGTATCGCTGGGCTCGACTTCAAGTGTAATGGTCTTTCCTGTGAGAGTCTTAACA 1505 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 1504 AAGATCTGCAT 1494 >seq778 Length=21138827 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| |||||| || ||||| ||||||||||| || | ||| || | || Sbjct 14606162 CAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGGCCATC 14606103 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || |||||||||||||| || ||||||| || | ||||||||| || Sbjct 14606102 TTCTAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 14606043 Query 44245 C 44245 | Sbjct 14606042 C 14606042 >seq3456 Length=47684 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || || || |||||||||||| |||||||| | || || | || || Sbjct 38774 CACAAGATGTAGAGTCGACTCCTTTTGGATATTGTAATCAGAAAGCGTACGACCTTCTTC 38833 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||| || | || || ||||||| || | || ||||| ||| Sbjct 38834 TAGCTGCTTACCAGCAAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTATCCTG 38893 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | |||| | || || || | || ||||| | ||||| || | Sbjct 38894 AATCTTCGACTTC-ACGTTCTCAATCGTATCACTCGGCTCAACCTCGAGTGTAATTGTTT 38952 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||||||| ||||| || |||||||| Sbjct 38953 TGCCAGTGAGGGTTTTCACAAAAATTTGCAT 38983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359974416763731