Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20microstoma_20[genbank_20GCA_5F000469805.2_202015-12- 11] 3,643 sequences; 182,136,974 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3456 136 1e-26 seq1091 134 3e-26 >seq3456 Length=47684 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| |||||||| ||||| || ||||| || || |||||||| || || || Sbjct 38980 CAAATTTTTGTGAAAACCCTCACTGGCAAAACAATTACACTCGAGGTTGA--GCCGAGTG 38923 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || |||||||| || ||||||||||| || || || ||||| || || || | Sbjct 38922 ATACGATTGAGAACGTGAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCAGATCAAC 38863 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 ||||||| || || || || || ||||| ||||| || | || ||| | ||||| || Sbjct 38862 AACGACTCATTTTTGCTGGTAAGCAGCTAGAAGAAGGTCGTACGCTTTCTGATTACAATA 38803 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| || || || || |||||||| Sbjct 38802 TCCAAAAGGAGTCGACTCTACATCTTGT 38775 >seq1091 Length=18644 Score = 134 bits (148), Expect = 3e-26 Identities = 156/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| ||||| |||||||| || ||||| || || ||||| || || || ||| Sbjct 1269 CAGATTTTTGTGAAGACTCTCACCGGTAAAACTATTACTCTCGAAGTTGA--GCCCAGCG 1326 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||| || || |||||||| ||||| ||||| || || || ||||| | Sbjct 1327 ATACCATCGAGAATGTAAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAAC 1386 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| |||||||| || || || || || |||||||| | || || | || || ||| Sbjct 1387 AACGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACCCTCTCTGACTACAACA 1446 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 ||||||| || || ||||| || |||| Sbjct 1447 TCCAAAAGGAGTCCACACTTCA-CTTG 1472 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || || || |||||||||||||| || || || || || || | ||| || | Sbjct 1497 CAGATCTTTGTTAAGACTCTCACAGGAAAGACCATTACACTTGAAGTCG--AGCCCAGCG 1554 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||| || || |||||||| ||||| ||||| || || || ||||| | Sbjct 1555 ATACCATTGAGAATGTGAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAAC 1614 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || |||||||| || || || || || |||||||| | ||||| | || || ||| Sbjct 1615 AGCGTCTTATCTTTGCTGGCAAGCAACTTGAAGATGGTCGTACTCTCTCTGACTACAACA 1674 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| ||||| || || |||||||| Sbjct 1675 TCCAAAAGGAATCTACTCTACATCTTGT 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203675014717742